5VPL
CRYSTAL STRUCTURE OF DER F 1 COMPLEXED WITH FAB 4C1
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d5vplc2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth C] | d5vplc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth C] | d5vplc3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cysteine proteinases | 8066335 | 3001808 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00112 | e5vplA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00112 | ECOD (1.6) |
B [auth C] | PF07654 | e5vplC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth C] | PF07686 | e5vplC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth D] | PF07654 | e5vplD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth D] | PF07686 | e5vplD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (utative) |
B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth C] | mAb 4C1 | L-KAPPA | Mus musculus (house mouse) | IGKV14-111*01, IGKJ2*01, IGKJ2*02, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202424-0) |
C [auth D] | mAb 4C1 | FGF19 | Mus musculus (house mouse) | IGHV3-2*02, IGHJ3*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202424-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C] | Light Chain | IGKV14 | Kappa | der f 1 variant | SAbDab (2024-06-21) |
C [auth D] | Heavy Chain | IGHV3 | - | der f 1 variant | SAbDab (2024-06-21) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00112 | Papain family cysteine protease (Peptidase_C1) | Papain family cysteine protease | - | Domain | |
B [auth C] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
B [auth C] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Der f 1 variant |
| |||
B [auth C] | 4C1 - LIGHT CHAIN | - | ||
C [auth D] | 4C1 - HEAVY CHAIN | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR025661 | Cysteine peptidase, asparagine active site | Active Site | |
IPR000169 | Cysteine peptidase, cysteine active site | Active Site | |
IPR025660 | Cysteine peptidase, histidine active site | Active Site | |
IPR013128 | Peptidase C1A | Family | |
IPR000668 | Peptidase C1A, papain C-terminal | Domain | |
IPR013201 | Cathepsin propeptide inhibitor domain (I29) | Domain | |
IPR039417 | Papain-like cysteine endopeptidase | Domain | |
B [auth C] | IPR003597 | Immunoglobulin C1-set | Domain |
B [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth C] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth C] | IPR003599 | Immunoglobulin subtype | Domain |
B [auth C] | IPR013106 | Immunoglobulin V-set domain | Domain |
B [auth C] | IPR007110 | Immunoglobulin-like domain | Domain |
B [auth C] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |