5VN5
Crystal structure of LigY from Sphingobium sp. strain SYK-6
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5vn5a_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
B | d5vn5b_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
C | d5vn5c1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Metallo-dependent hydrolases | automated matches | automated matches | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
C | d5vn5c2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Sphingobium sp. SYK-6 ) [TaxId: 627192 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Metallo-dependent hydrolases | 8086502 | 3000428 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Metallo-dependent hydrolases | 8086502 | 3000428 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Metallo-dependent hydrolases | 8086502 | 3000428 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Amidohydro_2 | e5vn5A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_2 | ECOD (1.6) |
B | Amidohydro_2 | e5vn5B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_2 | ECOD (1.6) |
C | Amidohydro_2 | e5vn5C1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04909 | Amidohydrolase (Amidohydro_2) | Amidohydrolase | These proteins are amidohydrolases that are related to Pfam:PF01979 [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl meta-cleavage compound hydrolase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032465 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase | Family | |
IPR006680 | Amidohydrolase-related | Domain | |
IPR032466 | Metal-dependent hydrolase | Homologous Superfamily |