Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyVEFS box-like 8090820 3002459 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AANAPC4_WD40_2e5vk3A2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
AEUF08652e5vk3A1 A: a/b three-layered sandwichesX: Polycomb protein Eed insertion domain (From Topology)H: Polycomb protein Eed insertion domain (From Topology)T: Polycomb protein Eed insertion domainF: EUF08652ECOD (1.6)
BSETe5vk3B6 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
BUNK_F_TYPEe5vk3B5 A: alpha arraysX: HTHH: HTHT: tri-helicalF: UNK_F_TYPEECOD (1.6)
BVEFS-Box_1e5vk3B1 A: alpha arraysX: lambda integrase-N-likeH: VEFS domain (From Topology)T: VEFS domainF: VEFS-Box_1ECOD (1.6)
BKOG1079_likee5vk3B4 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: KOG1079_likeECOD (1.6)
BKOG1079_4the5vk3B3 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: KOG1079_4thECOD (1.6)
BEUF08759e5vk3B7 A: few secondary structure elementsX: Ezh2 MCSS domain (From Topology)H: Ezh2 MCSS domain (From Topology)T: Ezh2 MCSS domainF: EUF08759ECOD (1.6)
BEUF08793e5vk3B2 A: extended segmentsX: Ezh2 N-terminal domain (From Topology)H: Ezh2 N-terminal domain (From Topology)T: Ezh2 N-terminal domainF: EUF08793ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22038Polycomb protein EED insertion domain (PRC2_EED_ins)Polycomb protein EED insertion domainEED is one of the core subunits of Polycomb Repressive Complex 2 (PRC2) that is involved in histone methylation. EED consists of two domains: a seven-bladed beta-propeller and a small alpha/beta domain that is inserted into the sixth blade [1]. EED s ...EED is one of the core subunits of Polycomb Repressive Complex 2 (PRC2) that is involved in histone methylation. EED consists of two domains: a seven-bladed beta-propeller and a small alpha/beta domain that is inserted into the sixth blade [1]. EED specifically binds to histone tails carrying trimethyl-lysine residues associated with repressive chromatin marks, and this leads to the allosteric activation of the methyltransferase activity of PRC2 [2].
Domain
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00856SET domain (SET)SET domain- Family
PF21509Fungal polycomb repressive complex 2, Ezh2-like, preSET CXC domain (Ezh2-like__CXC_fung)Fungal polycomb repressive complex 2, Ezh2-like, preSET CXC domainThis domain is found in a group of mostly fungal proteins, including the Polycomb repressive complex 2 (PRC2) subunit Ezh2 from Chaetomium thermophilum (Swiss:G0SDW4), which is responsible for methylation of histone H3 lysine 27 (H3K27) and therefore ...This domain is found in a group of mostly fungal proteins, including the Polycomb repressive complex 2 (PRC2) subunit Ezh2 from Chaetomium thermophilum (Swiss:G0SDW4), which is responsible for methylation of histone H3 lysine 27 (H3K27) and therefore involved in epigenetic gene silencing. This entry represents the domain found N-terminal to to the SET domain (Pfam:PF00856). It contains a Zn3Cys8His and a Zn3Cys9 cluster [1-4].
Domain
PF18601EZH2 N-terminal domain (EZH2_N)EZH2 N-terminal domainPolycomb repressive complex 2 (PRC2) carries out the methylation of lysine 27 of histone H3, a hallmark of repressive chromatin. Three core subunits make up the catalytic core of PRC2; the SET domain containing EZH2, the zinc-finger containing SUZ12 ...Polycomb repressive complex 2 (PRC2) carries out the methylation of lysine 27 of histone H3, a hallmark of repressive chromatin. Three core subunits make up the catalytic core of PRC2; the SET domain containing EZH2, the zinc-finger containing SUZ12 and the WD40 repeat protein EED. The complex forms a compact arrangement of three lobes. This is the N-terminal domain of EZH2 [1].
Domain
PF18600Fungal MCSS domain (Ezh2_MCSS_fung)Fungal MCSS domainPolycomb repressive complex 2 (PRC2) carries out the methylation of lysine 27 of histone H3, a hallmark of repressive chromatin. Three core subunits make up the catalytic core of PRC2; the SET domain containing EZH2, the zinc-finger containing SUZ12 ...Polycomb repressive complex 2 (PRC2) carries out the methylation of lysine 27 of histone H3, a hallmark of repressive chromatin. Three core subunits make up the catalytic core of PRC2; the SET domain containing EZH2, the zinc-finger containing SUZ12 and the WD40 repeat protein EED. The complex forms a compact arrangement of three lobes. The middle lobe largely comprises two domains that mark the beginning of the carboxy (C)-terminal region of EZH2 (MCSS and SANT2) and the helical, C-terminal, component of the Suz12 Vefs domain. This entry describes the MCSS (also known as SANT2L) domain. There is one zinc binding (Zn1Cys3His1) which is formed solely by MCSS [1, 2].
Domain
PF09733VEFS-Box of polycomb protein (VEFS-Box)VEFS-Box of polycomb protein- Family