Annotations: 5VJX

Crystal structure of the CLOCK Transcription Domain Exon19 in Complex with a Repressor

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	Circadian locomoter output cycles protein kaput	sequence-specific DNA binding DNA binding binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity protein N-acyltransferase activity protein-lysine-acetyltransferase activity acetyltransferase activity protein N-acetyltransferase activity catalytic activity, acting on a protein sequence-specific DNA binding DNA binding binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity protein binding protein dimerization activity protein N-acyltransferase activity protein-lysine-acetyltransferase activity acetyltransferase activity protein N-acetyltransferase activity catalytic activity, acting on a protein acyltransferase activity N-acetyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity sequence-specific double-stranded DNA binding double-stranded DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity histone acetyltransferase activity histone modifying activity RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding chromatin DNA binding E-box binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation positive regulation of biological process response to external stimulus regulation of inflammatory response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stimulus regulation of response to stress response to stress positive regulation of defense response inflammatory response response to redox state cellular response to stimulus response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular process cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus regulation of biosynthetic process rhythmic process regulation of cellular process circadian regulation of gene expression circadian rhythm regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process multicellular organismal process hair cycle molting cycle regulation of hair cycle regulation of multicellular organismal process regulation of localization establishment of protein localization nitrogen compound transport regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling hormone secretion protein localization to extracellular region cell communication localization peptide secretion regulation of secretion by cell secretion by cell signal release intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of signaling regulation of transport secretion regulation of hormone levels regulation of peptide transport regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell cell-cell signaling regulation of protein transport protein secretion establishment of localization regulation of protein secretion regulation of secretion peptide transport protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization hormone transport regulation of cell communication insulin secretion RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process DNA damage checkpoint signaling regulation of cell cycle phase transition negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction cellular response to stress negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction cell cycle regulation of cell cycle cell cycle process regulation of cell cycle process DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling DNA damage response signal transduction in response to DNA damage negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process regulation of developmental process cellular developmental process cell development regulation of cell differentiation regulation of type B pancreatic cell development epithelial cell differentiation regulation of cell development multicellular organism development pancreas development cell differentiation anatomical structure development endocrine pancreas development type B pancreatic cell differentiation system development epithelium development endocrine system development animal organ development type B pancreatic cell development tissue development epithelial cell development enteroendocrine cell differentiation animal gross anatomical part developmental process regulation of circadian rhythm intracellular receptor signaling pathway response to lipid negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction hormone-mediated signaling pathway negative regulation of cell communication cellular response to endogenous stimulus negative regulation of intracellular steroid hormone receptor signaling pathway response to hormone regulation of intracellular signal transduction response to steroid hormone regulation of intracellular steroid hormone receptor signaling pathway nuclear receptor-mediated steroid hormone signaling pathway cellular response to steroid hormone stimulus steroid hormone receptor signaling pathway cellular response to hormone stimulus negative regulation of response to stimulus response to endogenous stimulus nuclear receptor-mediated corticosteroid signaling pathway negative regulation of signal transduction cellular response to chemical stimulus response to chemical cellular response to lipid negative regulation of nuclear receptor-mediated glucocorticoid signaling pathway nuclear receptor-mediated signaling pathway regulation of nuclear receptor-mediated glucocorticoid signaling pathway nuclear receptor-mediated glucocorticoid signaling pathway catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein metabolic process positive regulation of circadian rhythm protein acetylation macromolecule modification protein modification process protein acylation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle nucleus membrane-enclosed lumen perichromatin fibrils nuclear chromosome chromatin intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear lumen chromatoid body cytoplasmic ribonucleoprotein granule ribonucleoprotein granule supramolecular complex nucleoplasm RNA polymerase II transcription regulator complex CLOCK-BMAL transcription complex nuclear protein-containing complex
A, BA [auth d], D, G, J, A, BA [auth d], D, G, J, M, P [auth R], S [auth U], V [auth X], Y [auth a]	CLOCK-interacting pacemaker	-	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process rhythmic process circadian rhythm negative regulation of circadian rhythm regulation of circadian rhythm	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle membraneless organelle nuclear lumen nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR047230	Circadian locomoter output cycles protein kaput-like	Family
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR001067	Nuclear translocator	Family
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR035965	PAS domain superfamily	Homologous Superfamily
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR001610	PAC motif	Repeat
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR036638	Helix-loop-helix DNA-binding domain superfamily	Homologous Superfamily
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR013767	PAS fold	Domain
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR000014	PAS domain	Domain
AA [auth c], B, C, CA [auth e], DA [auth f], AA [auth c], B, C, CA [auth e], DA [auth f], E, F, H, I, K, L, N, O, Q [auth S], R [auth T], T [auth V], U [auth W], W [auth Y], X [auth Z], Z [auth b]	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	Domain
A, BA [auth d], D, G, J, A, BA [auth d], D, G, J, M, P [auth R], S [auth U], V [auth X], Y [auth a]	IPR031602	Clock-interacting pacemaker	Family