Skip to main content

 5VA8 | pdb_00005va8

Crystal Structure of Short-chain dehydrogenase/reductase SDR from Burkholderia phymatum in complex with NADP

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd5va8d1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)
Dd5va8d2 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)
Cd5va8c1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)
Cd5va8c2 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)
Bd5va8b1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)
Bd5va8b2 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)
Ad5va8a1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)
Ad5va8a2 Artifacts Tags Tags Tags N-terminal Tags (Paraburkholderia phymatum STM815 ) [TaxId: 391038 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilySDR-like 8067008 3000038 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySDR-like 8067008 3000038 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySDR-like 8067008 3000038 SCOP2B (2022-06-29)
ASCOP2 FamilyShort-chain dehydrogenases/reductases, SDR 8067007 4000029 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySDR-like 8067008 3000038 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Dadh_short_C2e5va8D1 A: alpha arraysX: POZ domainH: Rubredoxin-relatedT: Rubredoxin-relatedF: adh_short_C2ECOD (v295.2)
Cadh_short_C2e5va8C1 A: alpha arraysX: POZ domainH: Rubredoxin-relatedT: Rubredoxin-relatedF: adh_short_C2ECOD (v295.2)
Badh_short_C2e5va8B1 A: alpha arraysX: POZ domainH: Rubredoxin-relatedT: Rubredoxin-relatedF: adh_short_C2ECOD (v295.2)
Aadh_short_C2e5va8A1 A: alpha arraysX: POZ domainH: Rubredoxin-relatedT: Rubredoxin-relatedF: adh_short_C2ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF13561Enoyl-(Acyl carrier protein) reductase (adh_short_C2)Enoyl-(Acyl carrier protein) reductaseThis domain is found in Enoyl-(Acyl carrier protein) reductases. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B, C, D
IPR002347Short-chain dehydrogenase/reductase SDRFamily
A, B, C, D
IPR050259Short-chain dehydrogenases/reductasesFamily