5V6D
Crystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with citrate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Nucleoside diphosphate kinase, NDK | 8061556 | 4001261 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8061557 | 3001175 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NDK | e5v6dA1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
B | NDK | e5v6dB1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
C | NDK | e5v6dC1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
D | NDK | e5v6dD1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
E | NDK | e5v6dE1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
F | NDK | e5v6dF1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
G | NDK | e5v6dG1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
H | NDK | e5v6dH1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
I | NDK | e5v6dI1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
J | NDK | e5v6dJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
K | NDK | e5v6dK1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
L | NDK | e5v6dL1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
M | NDK | e5v6dM1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
N | NDK | e5v6dN1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
O | NDK | e5v6dO1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
P | NDK | e5v6dP1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023005 | Nucleoside diphosphate kinase, active site | Active Site | |
IPR034907 | Nucleoside diphosphate kinase-like domain | Domain | |
IPR036850 | Nucleoside diphosphate kinase-like domain superfamily | Homologous Superfamily | |
IPR001564 | Nucleoside diphosphate kinase | Family |