5V5S
multi-drug efflux; membrane transport; RND superfamily; Drug resistance
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Outer membrane efflux proteins (OEP) | 8037933 | 3000246 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Outer membrane efflux proteins (OEP) | 8037933 | 3000246 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Outer membrane efflux proteins (OEP) | 8037933 | 3000246 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042523 | 3000503 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042529 | 3000503 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042534 | 3000769 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042528 | 3000503 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042535 | 3000769 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042534 | 3000769 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042525 | 3000503 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042535 | 3000769 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042531 | 3000526 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042533 | 3000526 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042525 | 3000503 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042529 | 3000503 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042533 | 3000526 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042535 | 3000769 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042535 | 3000769 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042525 | 3000503 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042529 | 3000503 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042531 | 3000526 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042534 | 3000769 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042529 | 3000503 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042525 | 3000503 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042534 | 3000769 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042528 | 3000503 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042523 | 3000503 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042535 | 3000769 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042529 | 3000503 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042535 | 3000769 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042523 | 3000503 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042525 | 3000503 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042531 | 3000526 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042528 | 3000503 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042534 | 3000769 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042533 | 3000526 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042534 | 3000769 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042525 | 3000503 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Multidrug efflux transporter AcrB pore domain PN1 PN2 PC1 and PC2 subdomains | 8042529 | 3000503 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02321 | e5v5sA1 | A: a+b duplicates or obligate multimers | X: Outer membrane efflux proteins (OEP) (From Topology) | H: Outer membrane efflux proteins (OEP) (From Topology) | T: Outer membrane efflux proteins (OEP) | F: PF02321 | ECOD (1.6) |
B | PF02321 | e5v5sB1 | A: a+b duplicates or obligate multimers | X: Outer membrane efflux proteins (OEP) (From Topology) | H: Outer membrane efflux proteins (OEP) (From Topology) | T: Outer membrane efflux proteins (OEP) | F: PF02321 | ECOD (1.6) |
C | PF02321 | e5v5sC1 | A: a+b duplicates or obligate multimers | X: Outer membrane efflux proteins (OEP) (From Topology) | H: Outer membrane efflux proteins (OEP) (From Topology) | T: Outer membrane efflux proteins (OEP) | F: PF02321 | ECOD (1.6) |
E | F_UNCLASSIFIED | e5v5sE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
E | PF00529 | e5v5sE4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00529 | ECOD (1.6) |
E | F_UNCLASSIFIED | e5v5sE2 | A: alpha bundles | X: helical hairpin of HlyD-like secretion proteins (From Topology) | H: helical hairpin of HlyD-like secretion proteins (From Topology) | T: helical hairpin of HlyD-like secretion proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
E | F_UNCLASSIFIED | e5v5sE3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e5v5sF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
F | PF00529 | e5v5sF3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00529 | ECOD (1.6) |
F | F_UNCLASSIFIED | e5v5sF2 | A: alpha bundles | X: helical hairpin of HlyD-like secretion proteins (From Topology) | H: helical hairpin of HlyD-like secretion proteins (From Topology) | T: helical hairpin of HlyD-like secretion proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e5v5sF4 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
G | F_UNCLASSIFIED | e5v5sG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
G | PF00529 | e5v5sG3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00529 | ECOD (1.6) |
G | F_UNCLASSIFIED | e5v5sG4 | A: alpha bundles | X: helical hairpin of HlyD-like secretion proteins (From Topology) | H: helical hairpin of HlyD-like secretion proteins (From Topology) | T: helical hairpin of HlyD-like secretion proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
G | F_UNCLASSIFIED | e5v5sG2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
I | F_UNCLASSIFIED | e5v5sI4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
I | PF00529 | e5v5sI2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00529 | ECOD (1.6) |
I | F_UNCLASSIFIED | e5v5sI3 | A: alpha bundles | X: helical hairpin of HlyD-like secretion proteins (From Topology) | H: helical hairpin of HlyD-like secretion proteins (From Topology) | T: helical hairpin of HlyD-like secretion proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
I | F_UNCLASSIFIED | e5v5sI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e5v5sD3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF00529 | e5v5sD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00529 | ECOD (1.6) |
D | F_UNCLASSIFIED | e5v5sD2 | A: alpha bundles | X: helical hairpin of HlyD-like secretion proteins (From Topology) | H: helical hairpin of HlyD-like secretion proteins (From Topology) | T: helical hairpin of HlyD-like secretion proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e5v5sD4 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
H | F_UNCLASSIFIED | e5v5sH4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: F_UNCLASSIFIED | ECOD (1.6) |
H | PF00529 | e5v5sH2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00529 | ECOD (1.6) |
H | F_UNCLASSIFIED | e5v5sH1 | A: alpha bundles | X: helical hairpin of HlyD-like secretion proteins (From Topology) | H: helical hairpin of HlyD-like secretion proteins (From Topology) | T: helical hairpin of HlyD-like secretion proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
H | F_UNCLASSIFIED | e5v5sH3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
J | PF00873 | e5v5sJ6 | A: alpha bundles | X: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | H: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | T: Multidrug efflux transporter AcrB transmembrane domain | F: PF00873 | ECOD (1.6) |
J | PF00873 | e5v5sJ5 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: PF00873 | ECOD (1.6) |
J | PF00873 | e5v5sJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB TolC docking domain | F: PF00873 | ECOD (1.6) |
K | PF00873 | e5v5sK1 | A: alpha bundles | X: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | H: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | T: Multidrug efflux transporter AcrB transmembrane domain | F: PF00873 | ECOD (1.6) |
K | PF00873 | e5v5sK4 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: PF00873 | ECOD (1.6) |
K | PF00873 | e5v5sK6 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB TolC docking domain | F: PF00873 | ECOD (1.6) |
L | PF00873 | e5v5sL2 | A: alpha bundles | X: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | H: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | T: Multidrug efflux transporter AcrB transmembrane domain | F: PF00873 | ECOD (1.6) |
L | PF00873 | e5v5sL7 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: PF00873 | ECOD (1.6) |
L | PF00873 | e5v5sL3 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB TolC docking domain | F: PF00873 | ECOD (1.6) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3000216 | acrB | Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. | CARD (3.2.9) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:0010004 | resistance-nodulation-cell division (RND) antibiotic efflux pump | fluoroquinolone antibiotic, cephalosporin, glycylcycline, penam, tetracycline antibiotic, rifamycin antibiotic, phenicol antibiotic, disinfecting agents and antiseptics | antibiotic efflux | CARD (3.2.9) | |
ARO:0010004 | resistance-nodulation-cell division (RND) antibiotic efflux pump | fluoroquinolone antibiotic, cephalosporin, glycylcycline, penam, tetracycline antibiotic, rifamycin antibiotic, phenicol antibiotic, disinfecting agents and antiseptics | antibiotic efflux | CARD (3.2.9) | |
ARO:0010004 | resistance-nodulation-cell division (RND) antibiotic efflux pump | fluoroquinolone antibiotic, cephalosporin, glycylcycline, penam, tetracycline antibiotic, rifamycin antibiotic, phenicol antibiotic, disinfecting agents and antiseptics | antibiotic efflux | CARD (3.2.9) | |
ARO:0010004 | resistance-nodulation-cell division (RND) antibiotic efflux pump | fluoroquinolone antibiotic, cephalosporin, glycylcycline, penam, tetracycline antibiotic, rifamycin antibiotic, phenicol antibiotic, disinfecting agents and antiseptics | antibiotic efflux | CARD (3.2.9) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02321 | Outer membrane efflux protein (OEP) | Outer membrane efflux protein | - | Family | |
PF00529 | Cation efflux system protein CusB domain 1 (CusB_dom_1) | Cation efflux system protein CusB domain 1 | - | Family | |
PF16576 | Barrel-sandwich domain of CusB or HlyD membrane-fusion (HlyD_D23) | Barrel-sandwich domain of CusB or HlyD membrane-fusion | HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole ... | Domain | |
PF00873 | AcrB/AcrD/AcrF family (ACR_tran) | AcrB/AcrD/AcrF family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Resistance-nodulation-cell division | Hydrophobe/amphiphile efflux-1 family |