5USH
Structure of vaccinia virus D8 protein bound to human Fab vv66
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Carbonic anhydrase | 8065133 | 3001672 | SCOP2B (2021-05-27) |
F [auth X] | SCOP2B Superfamily | Carbonic anhydrase | 8065133 | 3001672 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00194 | e5ushA1 | A: beta meanders | X: Carbonic anhydrase (From Topology) | H: Carbonic anhydrase (From Topology) | T: Carbonic anhydrase | F: PF00194 | ECOD (1.6) |
F [auth X] | PF00194 | e5ushX1 | A: beta meanders | X: Carbonic anhydrase (From Topology) | H: Carbonic anhydrase (From Topology) | T: Carbonic anhydrase | F: PF00194 | ECOD (1.6) |
B [auth D] | PF07654 | e5ushD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth D] | PF07686 | e5ushD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth H] | PF07654 | e5ushH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth H] | PF07686 | e5ushH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth E] | PF07654 | e5ushE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth E] | PF07686 | e5ushE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth L] | PF07654 | e5ushL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth L] | PF07686 | e5ushL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.200.10 | Alpha Beta | Roll | Carbonic Anhydrase II | Alpha carbonic anhydrase | CATH (4.3.0) |
F [auth X] | 3.10.200.10 | Alpha Beta | Roll | Carbonic Anhydrase II | Alpha carbonic anhydrase | CATH (4.3.0) |
B [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth D], D [auth H] | vv66 Fab | VH-CH1 | Homo sapiens (human) | IGHV4-39*01, IGHV4-39*07, IGHJ1*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202428-2) |
C [auth E], E [auth L] | vv66 Fab | L-LAMBDA | Homo sapiens (human) | IGLV1-40*01, IGLJ7*01, IGLC1*02 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202428-2) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth D], D [auth H] | Heavy Chain | IGHV4 | - | imv membrane protein | SAbDab (2024-07-12) |
C [auth E], E [auth L] | Light Chain | IGLV1 | Lambda | imv membrane protein | SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, F [auth X] | PF00194 | Eukaryotic-type carbonic anhydrase (Carb_anhydrase) | Eukaryotic-type carbonic anhydrase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, F [auth X] | IMV membrane protein | |||
B [auth D], D [auth H] | Fab vv66 heavy chain | - | - | - |
C [auth E], E [auth L] | Fab vv66 light chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, F [auth X] | IPR001148 | Alpha carbonic anhydrase domain | Domain |
A, F [auth X] | IPR036398 | Alpha carbonic anhydrase domain superfamily | Homologous Superfamily |
A, F [auth X] | IPR023561 | Carbonic anhydrase, alpha-class | Family |