5UMF
Crystal Structure of a Ribulose-phosphate 3-epimerase from Neisseria gonorrhoeae with bound phosphate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5umfa_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Ribulose-phoshate binding barrel | automated matches | automated matches | (Neisseria gonorrhoeae NCCP11945 ) [TaxId: 521006 ], | SCOPe (2.08) |
B | d5umfb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Ribulose-phoshate binding barrel | automated matches | automated matches | (Neisseria gonorrhoeae NCCP11945 ) [TaxId: 521006 ], | SCOPe (2.08) |
C | d5umfc_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Ribulose-phoshate binding barrel | automated matches | automated matches | (Neisseria gonorrhoeae NCCP11945 ) [TaxId: 521006 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | D-ribulose-5-phosphate 3-epimerase | 8083104 | 4003059 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Ribulose-phoshate binding barrel | 8083105 | 3000216 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8083105 | 3000216 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8083105 | 3000216 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00834 | e5umfA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00834 | ECOD (1.6) |
B | PF00834 | e5umfB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00834 | ECOD (1.6) |
C | PF00834 | e5umfC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00834 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
B | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
C | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00834 | Ribulose-phosphate 3 epimerase family (Ribul_P_3_epim) | Ribulose-phosphate 3 epimerase family | This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000056 | Ribulose-phosphate 3-epimerase-like | Family | |
IPR011060 | Ribulose-phosphate binding barrel | Homologous Superfamily | |
IPR026019 | Ribulose-phosphate 3-epimerase | Family | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily |