5UKB
VSV N PROTEIN IN COMPLEX WITH INHIBITORY NANOBODY 1004
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth D] | SCOP2B Superfamily | Rhabdovirus nucleoprotein-like | 8101355 | 3001763 | SCOP2B (2021-05-27) |
D [auth C] | SCOP2B Superfamily | Rhabdovirus nucleoprotein-like | 8101355 | 3001763 | SCOP2B (2021-05-27) |
F [auth B] | SCOP2B Superfamily | Rhabdovirus nucleoprotein-like | 8101355 | 3001763 | SCOP2B (2021-05-27) |
H [auth A] | SCOP2B Superfamily | Rhabdovirus nucleoprotein-like | 8101355 | 3001763 | SCOP2B (2021-05-27) |
J [auth E] | SCOP2B Superfamily | Rhabdovirus nucleoprotein-like | 8101355 | 3001763 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth d] | PF07686 | e5ukbd1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth c] | PF07686 | e5ukbc1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth b] | PF07686 | e5ukbb1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth a] | PF07686 | e5ukba1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth e] | PF07686 | e5ukbe1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth D] | PF00945 | e5ukbD1 | A: alpha complex topology | X: P40 nucleoprotein-like | H: Rhabdovirus nucleocapsid protein (From Topology) | T: Rhabdovirus nucleocapsid protein | F: PF00945 | ECOD (1.6) |
D [auth C] | PF00945 | e5ukbC1 | A: alpha complex topology | X: P40 nucleoprotein-like | H: Rhabdovirus nucleocapsid protein (From Topology) | T: Rhabdovirus nucleocapsid protein | F: PF00945 | ECOD (1.6) |
F [auth B] | PF00945 | e5ukbB1 | A: alpha complex topology | X: P40 nucleoprotein-like | H: Rhabdovirus nucleocapsid protein (From Topology) | T: Rhabdovirus nucleocapsid protein | F: PF00945 | ECOD (1.6) |
H [auth A] | PF00945 | e5ukbA1 | A: alpha complex topology | X: P40 nucleoprotein-like | H: Rhabdovirus nucleocapsid protein (From Topology) | T: Rhabdovirus nucleocapsid protein | F: PF00945 | ECOD (1.6) |
J [auth E] | PF00945 | e5ukbE1 | A: alpha complex topology | X: P40 nucleoprotein-like | H: Rhabdovirus nucleocapsid protein (From Topology) | T: Rhabdovirus nucleocapsid protein | F: PF00945 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | Anti-vesicular stomatitis virus N VHH | null | Vicugna pacos (alpaca) | - | - | RPI | Protein | IMGT (202428-2) |
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | Nucleocapsid | null | Indiana vesiculovirus | - | - | RPI | Protein | IMGT (202428-2) |
K [auth R] | Nucleocapsid | DNA | Indiana vesiculovirus | - | - | RPI | Protein | IMGT (202428-2) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | Heavy Chain | IGHV1 | - | nucleocapsid | SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | PF00945 | Rhabdovirus nucleocapsid protein (Rhabdo_ncap) | Rhabdovirus nucleocapsid protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | Anti-vesicular stomatitis virus N VHH |
| ||
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | Nucleocapsid | - | ||
K [auth R] | RNA (45-MER) | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | IPR003599 | Immunoglobulin subtype | Domain |
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | IPR013106 | Immunoglobulin V-set domain | Domain |
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e] | IPR007110 | Immunoglobulin-like domain | Domain |
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | IPR035961 | Rhabdovirus nucleoprotein-like | Homologous Superfamily |
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | IPR000448 | Rhabdovirus nucleocapsid | Domain |
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | IPR023330 | Rhabdovirus nucleocapsid, N-terminal | Homologous Superfamily |
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E] | IPR023331 | Rhabdovirus nucleocapsid, C-terminal | Homologous Superfamily |