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 5U9P | pdb_00005u9p

Crystal structure of a gluconate 5-dehydrogenase from Burkholderia cenocepacia J2315 in complex with NADP and tartrate

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd5u9pd_ Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Burkholderia cenocepacia J2315 ) [TaxId: 216591 ], SCOPe (2.08)
Cd5u9pc_ Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Burkholderia cenocepacia J2315 ) [TaxId: 216591 ], SCOPe (2.08)
Bd5u9pb1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Burkholderia cenocepacia J2315 ) [TaxId: 216591 ], SCOPe (2.08)
Bd5u9pb2 Artifacts Tags Tags Tags N-terminal Tags (Burkholderia cenocepacia J2315 ) [TaxId: 216591 ], SCOPe (2.08)
Ad5u9pa1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Burkholderia cenocepacia J2315 ) [TaxId: 216591 ], SCOPe (2.08)
Ad5u9pa2 Artifacts Tags Tags Tags N-terminal Tags (Burkholderia cenocepacia J2315 ) [TaxId: 216591 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilySDR-like 8063248 3000038 SCOP2B (2022-06-29)
CSCOP2 FamilyShort-chain dehydrogenases/reductases, SDR 8063247 4000029 SCOP2 (2022-06-29)
CSCOP2 SuperfamilySDR-like 8063248 3000038 SCOP2 (2022-06-29)
BSCOP2B SuperfamilySDR-like 8063248 3000038 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySDR-like 8063248 3000038 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DDHHA1e5u9pD1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: profilin-likeT: C-terminal domain in DHH phosphoesterasesF: DHHA1ECOD (v295.2)
CDHHA1e5u9pC1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: profilin-likeT: C-terminal domain in DHH phosphoesterasesF: DHHA1ECOD (v295.2)
BDHHA1e5u9pB1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: profilin-likeT: C-terminal domain in DHH phosphoesterasesF: DHHA1ECOD (v295.2)
ADHHA1e5u9pA1 A: alpha arraysX: Alpha-crystallin B chain N-terminal domainH: profilin-likeT: C-terminal domain in DHH phosphoesterasesF: DHHA1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Gluconate 5-dehydrogenase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B, C, D
IPR002347Short-chain dehydrogenase/reductase SDRFamily
A, B, C, D
IPR020904Short-chain dehydrogenase/reductase, conserved siteConserved Site