5U01
Cooperative DNA binding by two RelA dimers
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | p53-like transcription factors | 8040233 | 3000758 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | E set domains | 8054875 | 3000070 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | E set domains | 8054875 | 3000070 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | p53-like transcription factors | 8040233 | 3000758 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | p53-like transcription factors | 8040233 | 3000758 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | E set domains | 8054875 | 3000070 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | E set domains | 8054875 | 3000070 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | p53-like transcription factors | 8040233 | 3000758 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RHD_dimer | e5u01A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: RHD_dimer | ECOD (1.6) |
A | RHD_DNA_bind | e5u01A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: RHD_DNA_bind | ECOD (1.6) |
B | RHD_dimer | e5u01B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: RHD_dimer | ECOD (1.6) |
B | RHD_DNA_bind | e5u01B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: RHD_DNA_bind | ECOD (1.6) |
C | RHD_dimer | e5u01C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: RHD_dimer | ECOD (1.6) |
C | RHD_DNA_bind | e5u01C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: RHD_DNA_bind | ECOD (1.6) |
D | RHD_dimer | e5u01D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: RHD_dimer | ECOD (1.6) |
D | RHD_DNA_bind | e5u01D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: RHD_DNA_bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.340 | Mainly Beta | Sandwich | Immunoglobulin-like | Rel homology domain (RHD), DNA-binding domain | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.340 | Mainly Beta | Sandwich | Immunoglobulin-like | Rel homology domain (RHD), DNA-binding domain | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C | 2.60.40.340 | Mainly Beta | Sandwich | Immunoglobulin-like | Rel homology domain (RHD), DNA-binding domain | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.340 | Mainly Beta | Sandwich | Immunoglobulin-like | Rel homology domain (RHD), DNA-binding domain | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16179 | Rel homology dimerisation domain (RHD_dimer) | Rel homology dimerisation domain | The Rel homology domain (RHD) is composed of two structural domains, an N-terminal DNA_binding domain (Pfam:PF00554) and a C-terminal dimerisation domain. This is the dimerisation domain [1]. | Domain | |
PF00554 | Rel homology DNA-binding domain (RHD_DNA_bind) | Rel homology DNA-binding domain | Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immu ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033926 | NFkappaB IPT domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR011539 | Rel homology domain, DNA-binding domain | Domain | |
IPR030495 | Transcription factor p65, RHD domain, N-terminal | Domain | |
IPR002909 | IPT domain | Domain | |
IPR030492 | Rel homology domain, conserved site | Conserved Site | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR037059 | Rel homology domain (RHD), DNA-binding domain superfamily | Homologous Superfamily | |
IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR000451 | NF-kappa-B/Dorsal | Family | |
IPR032397 | Rel homology dimerisation domain | Domain |