5TV7 | pdb_00005tv7

2.05 Angstrom Resolution Crystal Structure of Peptidoglycan-Binding Protein from Clostridioides difficile in Complex with Glutamine Hydroxamate.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APG_binding_1e5tv7A1 A: beta barrelsX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: PG_binding_1ECOD (v294.2)
APG_binding_5e5tv7A2 A: beta barrelsX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: PG_binding_5ECOD (v294.2)
BSasG_Ee5tv7B1 A: beta barrelsX: Tetrapyrrole methylase C-terminal domain-likeH: Tetrapyrrole methylase C-terminal domainT: Tetrapyrrole methylase C-terminal domainF: SasG_EECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21398Putative peptidoglycan-binding domain (PG_binding_5)Putative peptidoglycan-binding domainThis entry represents a putative peptidoglycan binding domain. Domain
A, B
PF01471Putative peptidoglycan binding domain (PG_binding_1)Putative peptidoglycan binding domainThis domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ...This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins [3]. The domain is found to bind peptidoglycan experimentally [4].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR002477Peptidoglycan binding-likeDomain
A, B
IPR036365PGBD-like superfamilyHomologous Superfamily
A, B
IPR036366PGBD superfamilyHomologous Superfamily
A, B
IPR048807Putative peptidoglycan-binding domainDomain