Annotations: 5TJR

X-ray Crystal structure of a methylmalonate semialdehyde dehydrogenase from Pseudomonas sp. AAC

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d5tjrf_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Pseudomonas sp. AAC ) [TaxId: 1502784 ],	SCOPe (2.08)
E	d5tjre_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Pseudomonas sp. AAC ) [TaxId: 1502784 ],	SCOPe (2.08)
D	d5tjrd_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Pseudomonas sp. AAC ) [TaxId: 1502784 ],	SCOPe (2.08)
C	d5tjrc_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Pseudomonas sp. AAC ) [TaxId: 1502784 ],	SCOPe (2.08)
B	d5tjrb_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Pseudomonas sp. AAC ) [TaxId: 1502784 ],	SCOPe (2.08)
A	d5tjra_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Pseudomonas sp. AAC ) [TaxId: 1502784 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	ALDH-like	8065661	4000806	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ALDH-like	8065662	3001479	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Ras	e5tjrF1	A: alpha arrays	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v295.2)
E	Ras	e5tjrE1	A: alpha arrays	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v295.2)
D	Ras	e5tjrD1	A: alpha arrays	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v295.2)
C	Ras	e5tjrC1	A: alpha arrays	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v295.2)
B	PCRF	e5tjrB1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PCRF	ECOD (v295.2)
A	Ras	e5tjrA1	A: alpha arrays	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Methylmalonate-semialdehyde dehydrogenase	oxidoreductase activity methylmalonate-semialdehyde dehydrogenase (acylating, NAD+) activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	pyrimidine-containing compound metabolic process catabolic process thymine catabolic process pyrimidine-containing compound catabolic process primary metabolic process pyrimidine nucleobase catabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process thymine metabolic process nucleobase-containing small molecule metabolic process nucleobase catabolic process nucleobase metabolic process small molecule metabolic process metabolic process pyrimidine-containing compound metabolic process catabolic process thymine catabolic process pyrimidine-containing compound catabolic process primary metabolic process pyrimidine nucleobase catabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process thymine metabolic process nucleobase-containing small molecule metabolic process nucleobase catabolic process nucleobase metabolic process small molecule metabolic process metabolic process cellular process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process branched-chain amino acid catabolic process proteinogenic amino acid metabolic process proteinogenic amino acid catabolic process carboxylic acid catabolic process branched-chain amino acid metabolic process L-valine catabolic process small molecule catabolic process amino acid catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR010061	Methylmalonate-semialdehyde dehydrogenase	Family
A, B, C, D, E A, B, C, D, E, F	IPR015590	Aldehyde dehydrogenase domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR016161	Aldehyde/histidinol dehydrogenase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016162	Aldehyde dehydrogenase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016163	Aldehyde dehydrogenase, C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR016160	Aldehyde dehydrogenase, cysteine active site	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.