5THK | pdb_00005thk

Crystal Structure of a Putative Dehydrogenase from Burkholderia cenocepacia with bound NADP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d5thkh_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
G	d5thkg1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
G	d5thkg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
F	d5thkf_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
E	d5thke_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
D	d5thkd_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
C	d5thkc_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
B	d5thkb1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
B	d5thkb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)
A	d5thka_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Burkholderia cenocepacia J2315 ) [TaxId: 216591 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	SDR-like	8076087	3000038	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SDR-like	8076087	3000038	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SDR-like	8076087	3000038	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SDR-like	8076087	3000038	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SDR-like	8076087	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8076087	3000038	SCOP2B (2022-06-29)
B	SCOP2 Family	Short-chain dehydrogenases/reductases, SDR	8076086	4000029	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	SDR-like	8076087	3000038	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	SDR-like	8076087	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	e5thkH1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)
G	e5thkG1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)
F	e5thkF1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)
E	e5thkE1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)
D	e5thkD1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)
C	e5thkC1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)
B	e5thkB1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)
A	e5thkA1	A: beta barrels	X: ALDH-like	H: ALDH-like	T: ALDH-like	F:	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Putative dehydrogenase	oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR057326	Ketoreductase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002347	Short-chain dehydrogenase/reductase SDR	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.