5T9P
Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | RNA-binding domain, RBD | 8061969 | 3000110 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8061969 | 3000110 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | RNA-binding domain, RBD | 8061969 | 3000110 | SCOP2B (2022-06-29) |
D | SCOP2 Family | Canonical RBD | 8061968 | 4000236 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | RNA-binding domain, RBD | 8061969 | 3000110 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | RRM_1_4 | e5t9pC1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_4 | ECOD (1.6) |
A [auth B] | RRM_1_4 | e5t9pB1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_4 | ECOD (1.6) |
C [auth A] | RRM_1_4 | e5t9pA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_4 | ECOD (1.6) |
D | RRM_1_4 | e5t9pD1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_4 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth C], C [auth A], D | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth C], C [auth A], D | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
A [auth B], B [auth C], C [auth A], D | IPR000504 | RNA recognition motif domain | Domain |
A [auth B], B [auth C], C [auth A], D | IPR034469 | Ribosome biogenesis protein 15, RNA recognition motif | Domain |
A [auth B], B [auth C], C [auth A], D | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |