5T1D
Crystal structure of EBV gHgL/gp42/E1D1 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth H] | d5t1dh_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
E [auth L] | d5t1dl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
E [auth L] | d5t1dl2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17488 | e5t1dA2 | A: beta sandwiches | X: C-terminal domain of envelope glycoprotein H (From Topology) | H: C-terminal domain of envelope glycoprotein H (From Topology) | T: C-terminal domain of envelope glycoprotein H | F: PF17488 | ECOD (1.6) |
A | PF02489 | e5t1dA1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF02489 | ECOD (1.6) |
B | PF11108 | e5t1dB1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: PF11108 | ECOD (1.6) |
C | F_UNCLASSIFIED | e5t1dC1 | A: a+b complex topology | X: C-type lectin-like (From Homology) | H: C-type lectin-like | T: C-type lectin-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth H] | PF07654 | e5t1dH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth H] | PF07686 | e5t1dH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth L] | PF07654 | e5t1dL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth L] | PF07686 | e5t1dL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.380.20 | Alpha Beta | Alpha-Beta Complex | Naphthalene 1,2-dioxygenase Alpha Subunit | Chain A, domain 1 | CATH (4.3.0) |
B | 3.10.390.20 | Alpha Beta | Roll | SAND domain | Viral glycoprotein L | CATH (4.3.0) |
D [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
D [auth H] | Fab E1D1 | VH-CH1 | Mus musculus (house mouse) | IGHV1-77*01, IGHV1-81*01, IGHJ4*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202431-0) |
E [auth L] | Fab E1D1 | L-KAPPA | Mus musculus (house mouse) | IGKV1-110*01, IGKJ1*01, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202431-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
D [auth H] | Heavy Chain | IGHV1 | - | envelope glycoprotein l | SAbDab (2024-08-09) |
E [auth L] | Light Chain | IGKV1 | Kappa | envelope glycoprotein l | SAbDab (2024-08-09) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17488 | Herpesvirus glycoprotein H C-terminal domain (Herpes_glycoH_C) | Herpesvirus glycoprotein H C-terminal domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. This entry represents the C-terminal domain. | Domain | |
PF11108 | Viral glycoprotein L (Phage_glycop_gL) | Viral glycoprotein L | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038172 | Herpesvirus glycoprotein H, C-terminal domain superfamily | Homologous Superfamily | |
IPR003493 | Herpesvirus glycoprotein H | Family | |
IPR035305 | Herpesvirus glycoprotein H, C-terminal | Domain | |
IPR034708 | Envelope glycoprotein L | Family | |
IPR038313 | Herpesvirus glycoprotein L, rhadinovirus-type superfamily | Homologous Superfamily | |
IPR020175 | Herpesvirus glycoprotein L, rhadinovirus-type | Family | |
IPR016186 | C-type lectin-like/link domain superfamily | Homologous Superfamily | |
IPR016187 | C-type lectin fold | Homologous Superfamily |