5SVV
Structure and kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | d5svvd_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
B [auth A] | d5svva_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
C [auth B] | d5svvb_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
D [auth C] | d5svvc_ | Alpha and beta proteins (a+b) | Profilin-like | PYP-like sensor domain (PAS domain) | automated matches | automated matches | Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084710 | 3000471 | SCOP2B (2021-05-27) |
B [auth A] | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084710 | 3000471 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084710 | 3000471 | SCOP2B (2021-05-27) |
D [auth C] | SCOP2B Superfamily | PYP-like sensor domain (PAS domain) | 8084710 | 3000471 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | PF13426 | e5svvD1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
B [auth A] | PF13426 | e5svvA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
C [auth B] | PF13426 | e5svvB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
D [auth C] | PF13426 | e5svvC1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF13426 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth D] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
B [auth A] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
C [auth B] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
D [auth C] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], B [auth A], C [auth B], D [auth C] | PF13426 | PAS domain (PAS_9) | PAS domain | This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D], B [auth A], C [auth B], D [auth C] | IPR036047 | F-box-like domain superfamily | Homologous Superfamily |
A [auth D], B [auth A], C [auth B], D [auth C] | IPR000014 | PAS domain | Domain |
A [auth D], B [auth A], C [auth B], D [auth C] | IPR001810 | F-box domain | Domain |
A [auth D], B [auth A], C [auth B], D [auth C] | IPR035965 | PAS domain superfamily | Homologous Superfamily |
A [auth D], B [auth A], C [auth B], D [auth C] | IPR015915 | Kelch-type beta propeller | Homologous Superfamily |
A [auth D], B [auth A], C [auth B], D [auth C] | IPR011498 | Kelch repeat type 2 | Repeat |
A [auth D], B [auth A], C [auth B], D [auth C] | IPR011043 | Galactose oxidase/kelch, beta-propeller | Homologous Superfamily |