5OSI
Structure of retromer VPS29-VPS35C subunits complexed with RidL harpin loop (163-176)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5osia_ | Alpha and beta proteins (a+b) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | YfcE-like | Vacuolar protein sorting 29, VPS29 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d5osid_ | Alpha and beta proteins (a+b) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | YfcE-like | Vacuolar protein sorting 29, VPS29 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
G | d5osig_ | Alpha and beta proteins (a+b) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | YfcE-like | Vacuolar protein sorting 29, VPS29 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
J | d5osij_ | Alpha and beta proteins (a+b) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | YfcE-like | Vacuolar protein sorting 29, VPS29 | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2021-05-27) |
J | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2021-05-27) |
K | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12850 | e5osiA1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF12850 | ECOD (1.6) |
D | PF12850 | e5osiD1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF12850 | ECOD (1.6) |
G | PF12850 | e5osiG1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF12850 | ECOD (1.6) |
J | PF12850 | e5osiJ1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF12850 | ECOD (1.6) |
B | PF03635 | e5osiB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF03635 | ECOD (1.6) |
E | PF03635 | e5osiE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF03635 | ECOD (1.6) |
H | PF03635 | e5osiH1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF03635 | ECOD (1.6) |
K | PF03635 | e5osiK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF03635 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000979 | Phosphodiesterase MJ0936/Vps29 | Family | |
IPR024654 | Calcineurin-like phosphoesterase domain, lpxH-type | Domain | |
IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily | |
IPR028661 | Vacuolar protein sorting-associated protein 29 | Family | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR005378 | Vacuolar protein sorting-associated protein 35 | Family | |
IPR042491 | Vacuolar protein sorting-associated protein 35, C-terminal | Homologous Superfamily |