5OSH
Structure of retromer VPS29-VPS35C subunits complexed with RidL N-terminal domain (1-236)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Metallo-dependent phosphatases | 8036532 | 3001067 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | ARM repeat-like | 8051797 | 3000116 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Metallophos_2 | e5oshA1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2 | ECOD (1.6) |
D | Metallophos_2 | e5oshD1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2 | ECOD (1.6) |
G | Metallophos_2 | e5oshG1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2 | ECOD (1.6) |
J | Metallophos_2 | e5oshJ1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2 | ECOD (1.6) |
B | Vps35 | e5oshB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps35 | ECOD (1.6) |
E | Vps35 | e5oshE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps35 | ECOD (1.6) |
H | Vps35 | e5oshH1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps35 | ECOD (1.6) |
K | Vps35 | e5oshK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Vps35 | ECOD (1.6) |
C | F_UNCLASSIFIED | e5oshC1 | A: alpha superhelices | X: RidL repeats (From Topology) | H: RidL repeats (From Topology) | T: RidL repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e5oshF1 | A: alpha superhelices | X: RidL repeats (From Topology) | H: RidL repeats (From Topology) | T: RidL repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
I | F_UNCLASSIFIED | e5oshI1 | A: alpha superhelices | X: RidL repeats (From Topology) | H: RidL repeats (From Topology) | T: RidL repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
L | F_UNCLASSIFIED | e5oshL1 | A: alpha superhelices | X: RidL repeats (From Topology) | H: RidL repeats (From Topology) | T: RidL repeats | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12850 | Calcineurin-like phosphoesterase superfamily domain (Metallophos_2) | Calcineurin-like phosphoesterase superfamily domain | Members of this family are part of the Calcineurin-like phosphoesterase superfamily. | Domain | |
PF03635 | Vacuolar protein sorting-associated protein 35 (Vps35) | Vacuolar protein sorting-associated protein 35 | - | Repeat | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000979 | Phosphodiesterase MJ0936/Vps29 | Family | |
IPR024654 | Calcineurin-like phosphoesterase domain, lpxH-type | Domain | |
IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily | |
IPR028661 | Vacuolar protein sorting-associated protein 29 | Family | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR005378 | Vacuolar protein sorting-associated protein 35 | Family | |
IPR042491 | Vacuolar protein sorting-associated protein 35, C-terminal | Homologous Superfamily |