5OKZ
Crystal Strucrure of the Mpp6 Exosome complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
H [auth G] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8034656 | 3000135 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8034657 | 3001023 | SCOP2B (2022-06-29) |
LA [auth k] | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8034657 | 3001023 | SCOP2B (2022-06-29) |
LA [auth k] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8034656 | 3000135 | SCOP2B (2022-06-29) |
R [auth Q] | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8034657 | 3001023 | SCOP2B (2022-06-29) |
R [auth Q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8034656 | 3000135 | SCOP2B (2022-06-29) |
BA [auth a] | SCOP2B Superfamily | Eukaryotic type KH-domain (KH-domain type I) | 8034657 | 3001023 | SCOP2B (2022-06-29) |
BA [auth a] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8034656 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth m] | EXOSC1 | e5okzm1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EXOSC1 | ECOD (1.6) |
A [auth m] | ECR1_N_like | e5okzm2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_like | ECOD (1.6) |
DA [auth c] | EXOSC1 | e5okzc1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EXOSC1 | ECOD (1.6) |
DA [auth c] | ECR1_N_like | e5okzc2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_like | ECOD (1.6) |
J [auth I] | EXOSC1 | e5okzI2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EXOSC1 | ECOD (1.6) |
J [auth I] | ECR1_N_like | e5okzI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_like | ECOD (1.6) |
T [auth S] | EXOSC1 | e5okzS1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: EXOSC1 | ECOD (1.6) |
T [auth S] | ECR1_N_like | e5okzS2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N_like | ECOD (1.6) |
C [auth B] | RNase_PH_3 | e5okzB2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
C [auth B] | RNase_PH_C_3 | e5okzB1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
GA [auth f] | RNase_PH_3 | e5okzf1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
GA [auth f] | RNase_PH_C_3 | e5okzf2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
W [auth V] | RNase_PH_3 | e5okzV2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
W [auth V] | RNase_PH_C_3 | e5okzV1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
M [auth L] | RNase_PH_3 | e5okzL2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
M [auth L] | RNase_PH_C_3 | e5okzL1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
F [auth E] | RNase_PH_2 | e5okzE2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
F [auth E] | RNase_PH_C_1 | e5okzE1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
JA [auth i] | RNase_PH_2 | e5okzi2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
JA [auth i] | RNase_PH_C_1 | e5okzi1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
P [auth O] | RNase_PH_2 | e5okzO2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
P [auth O] | RNase_PH_C_1 | e5okzO1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
Z [auth Y] | RNase_PH_2 | e5okzY1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
Z [auth Y] | RNase_PH_C_1 | e5okzY2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
AA [auth Z] | RNase_PH_3 | e5okzZ1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
AA [auth Z] | KOG1068_like | e5okzZ2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: KOG1068_like | ECOD (1.6) |
G [auth F] | RNase_PH_3 | e5okzF1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
G [auth F] | KOG1068_like | e5okzF2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: KOG1068_like | ECOD (1.6) |
KA [auth j] | RNase_PH_3 | e5okzj2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
KA [auth j] | KOG1068_like | e5okzj1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: KOG1068_like | ECOD (1.6) |
Q [auth P] | RNase_PH_3 | e5okzP2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_3 | ECOD (1.6) |
Q [auth P] | KOG1068_like | e5okzP1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: KOG1068_like | ECOD (1.6) |
H [auth G] | S1 | e5okzG1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1 | ECOD (1.6) |
H [auth G] | KH_6 | e5okzG3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6 | ECOD (1.6) |
H [auth G] | KOG1004 | e5okzG2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: KOG1004 | ECOD (1.6) |
LA [auth k] | S1 | e5okzk3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1 | ECOD (1.6) |
LA [auth k] | KH_6 | e5okzk1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6 | ECOD (1.6) |
LA [auth k] | KOG1004 | e5okzk2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: KOG1004 | ECOD (1.6) |
R [auth Q] | S1 | e5okzQ2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1 | ECOD (1.6) |
R [auth Q] | KH_6 | e5okzQ3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6 | ECOD (1.6) |
R [auth Q] | KOG1004 | e5okzQ1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: KOG1004 | ECOD (1.6) |
BA [auth a] | S1 | e5okza3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1 | ECOD (1.6) |
BA [auth a] | KH_6 | e5okza2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6 | ECOD (1.6) |
BA [auth a] | KOG1004 | e5okza1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: KOG1004 | ECOD (1.6) |
B [auth A] | RNase_PH_2 | e5okzA1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
B [auth A] | RNase_PH_C_1 | e5okzA2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
L [auth K] | RNase_PH_2 | e5okzK1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
L [auth K] | RNase_PH_C_1 | e5okzK2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
V [auth U] | RNase_PH_2 | e5okzU2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
V [auth U] | RNase_PH_C_1 | e5okzU1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
FA [auth e] | RNase_PH_2 | e5okze1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
FA [auth e] | RNase_PH_C_1 | e5okze2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_1 | ECOD (1.6) |
D [auth C] | RNase_PH_2 | e5okzC1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
D [auth C] | RNase_PH_C_4 | e5okzC2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
HA [auth g] | RNase_PH_2 | e5okzg1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
HA [auth g] | RNase_PH_C_4 | e5okzg2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
N [auth M] | RNase_PH_2 | e5okzM1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
N [auth M] | RNase_PH_C_4 | e5okzM2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
X [auth W] | RNase_PH_2 | e5okzW2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH_2 | ECOD (1.6) |
X [auth W] | RNase_PH_C_4 | e5okzW1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_4 | ECOD (1.6) |
E [auth D] | RNase_PH | e5okzD2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
E [auth D] | RNase_PH_C_3 | e5okzD1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
IA [auth h] | RNase_PH | e5okzh2 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
IA [auth h] | RNase_PH_C_3 | e5okzh1 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
O [auth N] | RNase_PH | e5okzN1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
O [auth N] | RNase_PH_C_3 | e5okzN2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
Y [auth X] | RNase_PH | e5okzX1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: RNase_PH | ECOD (1.6) |
Y [auth X] | RNase_PH_C_3 | e5okzX2 | A: a+b two layers | X: Ribonuclease PH domain 2-like | H: Ribonuclease PH domain 2 (From Topology) | T: Ribonuclease PH domain 2 | F: RNase_PH_C_3 | ECOD (1.6) |
CA [auth b] | S1_5 | e5okzb3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
CA [auth b] | KH_6_1 | e5okzb1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_1 | ECOD (1.6) |
CA [auth b] | ECR1_N | e5okzb2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N | ECOD (1.6) |
I [auth H] | S1_5 | e5okzH1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
I [auth H] | KH_6_1 | e5okzH3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_1 | ECOD (1.6) |
I [auth H] | ECR1_N | e5okzH2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N | ECOD (1.6) |
S [auth R] | S1_5 | e5okzR3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
S [auth R] | KH_6_1 | e5okzR1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_1 | ECOD (1.6) |
S [auth R] | ECR1_N | e5okzR2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N | ECOD (1.6) |
MA [auth l] | S1_5 | e5okzl2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_5 | ECOD (1.6) |
MA [auth l] | KH_6_1 | e5okzl1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Eukaryotic type KH-domain (KH-domain type I) | F: KH_6_1 | ECOD (1.6) |
MA [auth l] | ECR1_N | e5okzl3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: ECR1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth m], DA [auth c], J [auth I], T [auth S] | PF21551 | Exosome complex component CSL4, N-terminal domain (CSL4_N) | Exosome complex component CSL4, N-terminal domain | This domain is found at the N-terminal end of Exosome complex component CSL4 from Saccharomyces cerevisiae, a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA ... | Domain |
A [auth m], DA [auth c], J [auth I], T [auth S] | PF10447 | Exosome component EXOSC1/CSL4 (EXOSC1) | Exosome component EXOSC1/CSL4 | This family of proteins are components of the exosome 3'->5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [1]. | Domain |
C [auth B], GA [auth f], M [auth L], W [auth V] | PF21266 | RRP4, S1 domain (RRP4_S1) | RRP4, S1 domain | Exosome complex component RRP4 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandw ... | Domain |
C [auth B], GA [auth f], M [auth L], W [auth V] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
C [auth B], GA [auth f], M [auth L], W [auth V] | PF14382 | Exosome complex exonuclease RRP4 N-terminal region (ECR1_N) | Exosome complex exonuclease RRP4 N-terminal region | ECR1_N is an N-terminal region of the exosome complex exonuclease RRP proteins. It is a G-rich domain which structurally is a rudimentary single hybrid fold with a permuted topology. | Domain |
C [auth B], GA [auth f], M [auth L], W [auth V] | PF15985 | KH domain (KH_6) | KH domain | KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. | Domain |
C [auth B], GA [auth f], M [auth L], W [auth V] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
F [auth E], JA [auth i], P [auth O], Z [auth Y] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
F [auth E], JA [auth i], P [auth O], Z [auth Y] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
AA [auth Z], G [auth F], KA [auth j], Q [auth P] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
AA [auth Z], G [auth F], KA [auth j], Q [auth P] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
BA [auth a], H [auth G], LA [auth k], R [auth Q] | PF18311 | Exosome complex exonuclease Rrp40 N-terminal domain (Rrp40_N) | Exosome complex exonuclease Rrp40 N-terminal domain | This is the N-terminal domain of Rrp40 of the exosome complex present in Saccharomyces cerevisiae. The RNA exosome complex is responsible for degrading RNA molecules in the 3' to 5' direction. Rrp40 is a 'cap' protein and binds the RNase PH barrel on ... | Domain |
BA [auth a], H [auth G], LA [auth k], R [auth Q] | PF21262 | Exosome complex component RRP40, S1 domain (RRP40_S1) | Exosome complex component RRP40, S1 domain | RRP40 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandwich hybrid domain (Pfam:P ... | Domain |
BA [auth a], H [auth G], LA [auth k], R [auth Q] | PF15985 | KH domain (KH_6) | KH domain | KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. | Domain |
BA [auth a], H [auth G], LA [auth k], R [auth Q] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
B [auth A], FA [auth e], L [auth K], V [auth U] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
B [auth A], FA [auth e], L [auth K], V [auth U] | PF18311 | Exosome complex exonuclease Rrp40 N-terminal domain (Rrp40_N) | Exosome complex exonuclease Rrp40 N-terminal domain | This is the N-terminal domain of Rrp40 of the exosome complex present in Saccharomyces cerevisiae. The RNA exosome complex is responsible for degrading RNA molecules in the 3' to 5' direction. Rrp40 is a 'cap' protein and binds the RNase PH barrel on ... | Domain |
B [auth A], FA [auth e], L [auth K], V [auth U] | PF21262 | Exosome complex component RRP40, S1 domain (RRP40_S1) | Exosome complex component RRP40, S1 domain | RRP40 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandwich hybrid domain (Pfam:P ... | Domain |
B [auth A], FA [auth e], L [auth K], V [auth U] | PF15985 | KH domain (KH_6) | KH domain | KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. | Domain |
B [auth A], FA [auth e], L [auth K], V [auth U] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
D [auth C], HA [auth g], N [auth M], X [auth W] | PF21551 | Exosome complex component CSL4, N-terminal domain (CSL4_N) | Exosome complex component CSL4, N-terminal domain | This domain is found at the N-terminal end of Exosome complex component CSL4 from Saccharomyces cerevisiae, a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA ... | Domain |
D [auth C], HA [auth g], N [auth M], X [auth W] | PF10447 | Exosome component EXOSC1/CSL4 (EXOSC1) | Exosome component EXOSC1/CSL4 | This family of proteins are components of the exosome 3'->5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [1]. | Domain |
D [auth C], HA [auth g], N [auth M], X [auth W] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
E [auth D], IA [auth h], O [auth N], Y [auth X] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
E [auth D], IA [auth h], O [auth N], Y [auth X] | PF01138 | 3' exoribonuclease family, domain 1 (RNase_PH) | 3' exoribonuclease family, domain 1 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
CA [auth b], I [auth H], MA [auth l], S [auth R] | PF21266 | RRP4, S1 domain (RRP4_S1) | RRP4, S1 domain | Exosome complex component RRP4 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandw ... | Domain |
CA [auth b], I [auth H], MA [auth l], S [auth R] | PF03725 | 3' exoribonuclease family, domain 2 (RNase_PH_C) | 3' exoribonuclease family, domain 2 | This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ... | Domain |
CA [auth b], I [auth H], MA [auth l], S [auth R] | PF14382 | Exosome complex exonuclease RRP4 N-terminal region (ECR1_N) | Exosome complex exonuclease RRP4 N-terminal region | ECR1_N is an N-terminal region of the exosome complex exonuclease RRP proteins. It is a G-rich domain which structurally is a rudimentary single hybrid fold with a permuted topology. | Domain |
CA [auth b], I [auth H], MA [auth l], S [auth R] | PF15985 | KH domain (KH_6) | KH domain | KH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. | Domain |