5OKM | pdb_00005okm

Crystal structure of human SHIP2 Phosphatase-C2

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	PylS_N	e5okmH1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: PylS_N	ECOD (v295.2)
G	PylS_N	e5okmG1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: PylS_N	ECOD (v295.2)
F	PylS_N	e5okmF1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: PylS_N	ECOD (v295.2)
E	PylS_N	e5okmE1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: PylS_N	ECOD (v295.2)
D	PylS_N	e5okmD1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: PylS_N	ECOD (v295.2)
C	PylS_N	e5okmC1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: PylS_N	ECOD (v295.2)
B	Exo_endo_phos2	e5okmB1	A: alpha arrays	X: LYR protein	H: LYR protein	T: LYR protein	F: Exo_endo_phos2	ECOD (v295.2)
B	C2_SHIP1-2_2nd	e5okmB2	A: alpha arrays	X: LYR protein	H: LYR protein	T: LYR protein	F: C2_SHIP1-2_2nd	ECOD (v295.2)
A	PylS_N	e5okmA1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F: PylS_N	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)
G	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)
F	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)
E	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)
D	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)
C	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)
B	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)
A	3.60.10.10	Alpha Beta	4-Layer Sandwich	Deoxyribonuclease I	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF24147	SHIP1/2 second C2 domain (C2_SHIP1-2_2nd)	SHIP1/2 second C2 domain	This entry represents the second C2 domain of Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatases 1/2 [1]. The C2 domains of these proteins modulate the activity of the phosphatase domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	inositol trisphosphate phosphatase activity phosphoric ester hydrolase activity inositol-polyphosphate 5-phosphatase activity inositol phosphate phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity protein binding binding SH2 domain binding protein domain specific binding SH3 domain binding phosphatidylinositol trisphosphate phosphatase activity inositol trisphosphate phosphatase activity phosphoric ester hydrolase activity inositol-polyphosphate 5-phosphatase activity inositol phosphate phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity protein binding binding SH2 domain binding protein domain specific binding SH3 domain binding phosphatidylinositol trisphosphate phosphatase activity phosphatidylinositol phosphate 5-phosphatase activity phosphatidylinositol phosphate phosphatase activity phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity cytoskeletal protein binding actin binding	phosphatidylinositol metabolic process dephosphorylation glycerophospholipid metabolic process lipid modification primary metabolic process phospholipid metabolic process organophosphate metabolic process phosphatidylinositol dephosphorylation phospholipid dephosphorylation phosphate-containing compound metabolic process metabolic process cellular process glycerolipid metabolic process phosphorus metabolic process phosphatidylinositol metabolic process dephosphorylation glycerophospholipid metabolic process lipid modification primary metabolic process phospholipid metabolic process organophosphate metabolic process phosphatidylinositol dephosphorylation phospholipid dephosphorylation phosphate-containing compound metabolic process metabolic process cellular process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process import into cell localization transport endocytosis establishment of localization developmental process endochondral ossification multicellular organismal process replacement ossification animal organ development endochondral bone morphogenesis multicellular organism development anatomical structure morphogenesis skeletal system development ossification anatomical structure development skeletal system morphogenesis animal organ morphogenesis bone morphogenesis animal gross anatomical part developmental process bone development system development regulation of biological process response to stimulus regulation of response to stimulus immune response immune system process biological regulation regulation of immune response regulation of immune system process regulation of cytoskeleton organization regulation of actin filament organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process actin cytoskeleton organization actin filament organization regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process regulation of supramolecular fiber organization cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization glycerophospholipid biosynthetic process lipid biosynthetic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate biosynthetic process establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of cell polarity mitotic cell cycle process establishment of mitotic spindle orientation microtubule-based process regulation of localization regulation of protein localization macromolecule localization intracellular protein localization cell adhesion cellular response to stimulus negative regulation of signaling signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell surface receptor protein tyrosine kinase signaling pathway cell communication negative regulation of cellular process regulation of insulin-like growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus insulin-like growth factor receptor signaling pathway negative regulation of insulin-like growth factor receptor signaling pathway negative regulation of signal transduction regulation of cell communication	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cell periphery basal part of cell membrane plasma membrane basal plasma membrane plasma membrane region cytoplasm cytosol actin cytoskeleton actin-based cell projection filopodium

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR057509	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1/2-like, second C2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000980	SH2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000300	Inositol polyphosphate-related phosphatase	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR057510	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1/2-like, first C2 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036691	Endonuclease/exonuclease/phosphatase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001660	Sterile alpha motif domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	: O15357	opsismodysplasia metabolic syndrome X type 2 diabetes mellitus schneckenbecken dysplasia hypertensive disorder Liver Cirrhosis, Experimental acquired metabolic disease intellectual disability lung carcinoma ovarian cancer astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma diabetes mellitus opsismodysplasia metabolic syndrome X type 2 diabetes mellitus schneckenbecken dysplasia hypertensive disorder Liver Cirrhosis, Experimental acquired metabolic disease intellectual disability lung carcinoma ovarian cancer astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma diabetes mellitus medulloblastoma osteosarcoma subependymal giant cell astrocytoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.