5OKI
Crystal structure of the Ctf18-1-8 module from Ctf18-RFC in complex with a 63 kDa fragment of DNA Polymerase epsilon
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1798 | e5okiA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: KOG1798 | ECOD (1.6) |
A | DNA_pol_B_exo1_1st | e5okiA3 | A: a+b two layers | X: Alpha-beta plaits | H: Family B DNA polymerase insertion domain (From Topology) | T: Family B DNA polymerase insertion domain | F: DNA_pol_B_exo1_1st | ECOD (1.6) |
A | DNA_pol_B_exo1_3rd | e5okiA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_pol_B_exo1_3rd | ECOD (1.6) |
B | KOG1798 | e5okiB3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: KOG1798 | ECOD (1.6) |
B | DNA_pol_B_exo1_1st | e5okiB2 | A: a+b two layers | X: Alpha-beta plaits | H: Family B DNA polymerase insertion domain (From Topology) | T: Family B DNA polymerase insertion domain | F: DNA_pol_B_exo1_1st | ECOD (1.6) |
B | DNA_pol_B_exo1_3rd | e5okiB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_pol_B_exo1_3rd | ECOD (1.6) |
C | Dcc1_1st | e5okiC4 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: Dcc1_1st | ECOD (1.6) |
C | Dcc1_3rd | e5okiC2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_3rd | ECOD (1.6) |
C | Dcc1_4th | e5okiC3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_4th | ECOD (1.6) |
C | Dcc1_2nd | e5okiC5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_2nd | ECOD (1.6) |
C | Dcc1_5th | e5okiC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_5th | ECOD (1.6) |
F [auth G] | Dcc1_1st | e5okiG5 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: Dcc1_1st | ECOD (1.6) |
F [auth G] | Dcc1_3rd | e5okiG3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_3rd | ECOD (1.6) |
F [auth G] | Dcc1_4th | e5okiG1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_4th | ECOD (1.6) |
F [auth G] | Dcc1_2nd | e5okiG2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_2nd | ECOD (1.6) |
F [auth G] | Dcc1_5th | e5okiG4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Dcc1_5th | ECOD (1.6) |
D | Ctf8 | e5okiD1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: Ctf8 | ECOD (1.6) |
G [auth H] | Ctf8 | e5okiH1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: Ctf8 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03104 | DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1) | DNA polymerase family B, exonuclease domain | - | Family | |
C, F [auth G] | PF09724 | Sister chromatid cohesion protein Dcc1 (Dcc1) | Sister chromatid cohesion protein Dcc1 | - | Family |
D, G [auth H] | PF09696 | Ctf8 (Ctf8) | Ctf8 | - | Family |