Annotations: 5ODV

Structure of Watermelon mosaic virus potyvirus.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Y [auth M]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
W [auth L]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
UA [auth X]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
U [auth K]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
SA [auth W]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
S [auth J]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
QA [auth V]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
Q [auth I]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
OA [auth U]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
MA [auth T]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
M [auth G]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
KA [auth S]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
K [auth F]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
IA [auth R]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
GA [auth Q]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
EA [auth P]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
CA [auth O]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
AA [auth N]	SCOP2B Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2B (2022-06-29)
A	SCOP2 Family	PepMV Coat protein-like	8089902	4005718	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PepMV Coat protein-like	8089901	3002401	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth M]	WD40	e5odvM1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
W [auth L]	WD40	e5odvL1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
UA [auth X]	WD40	e5odvX1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
U [auth K]	WD40	e5odvK1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
SA [auth W]	WD40	e5odvW1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
S [auth J]	WD40	e5odvJ1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
QA [auth V]	WD40	e5odvV1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
Q [auth I]	WD40	e5odvI1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
OA [auth U]	WD40	e5odvU1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
O [auth H]	WD40	e5odvH1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
MA [auth T]	WD40	e5odvT1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
M [auth G]	WD40	e5odvG1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
KA [auth S]	WD40	e5odvS1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
K [auth F]	WD40	e5odvF1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
IA [auth R]	WD40	e5odvR1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
I [auth E]	WD40	e5odvE1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
GA [auth Q]	WD40	e5odvQ1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
G [auth D]	WD40	e5odvD1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
EA [auth P]	WD40	e5odvP1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
E [auth C]	WD40	e5odvC1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
CA [auth O]	WD40	e5odvO1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
C [auth B]	WD40	e5odvB1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
AA [auth N]	WD40	e5odvN1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v294.2)
A	Utp12	e5odvA1	A: beta barrels	X: Trefoil/Plexin domain-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Utp12	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], B [auth a], BA [auth n], D [auth b], DA [auth o], F [auth c], FA [auth p], H [auth d], HA [auth q], J [auth e], JA [auth r], L [auth f], LA [auth s], N [auth g], NA [auth t], P [auth h], PA [auth u], R [auth i], RA [auth v], T [auth j], TA [auth w], V [auth k], VA [auth x], X [auth l], Z [auth m]	RNA (5'-R(PUPUPUPUP*U)-3')	-	-	-
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], Y [auth M]	coat protein	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth N], C [auth B], CA [auth O], E [auth C], A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth R], K [auth F], KA [auth S], M [auth G], MA [auth T], O [auth H], OA [auth U], Q [auth I], QA [auth V], S [auth J], SA [auth W], U [auth K], UA [auth X], W [auth L], Y [auth M]	IPR001592	Potyvirus coat protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5ODV | pdb_00005odv

Structure of Watermelon mosaic virus potyvirus.

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage