Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd5nvzc_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd5nvzf_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id5nvzi_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld5nvzl_ All beta proteins Prealbumin-like VHL VHL VHL Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad5nvza_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd5nvzd_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd5nvzg_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd5nvzj_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Elongin B Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5nvzb1 Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd5nvzb2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed5nvze1 Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed5nvze2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd5nvzh1 Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd5nvzh2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd5nvzk1 Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Elongin C Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd5nvzk2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CVHLe5nvzC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
CVHL_Ce5nvzC1 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)
FVHLe5nvzF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
FVHL_Ce5nvzF1 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)
IVHLe5nvzI2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
IVHL_Ce5nvzI1 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)
LVHLe5nvzL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: VHLECOD (1.6)
LVHL_Ce5nvzL2 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: VHL_CECOD (1.6)
Aubiquitin_2e5nvzA1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
Dubiquitin_2e5nvzD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
Gubiquitin_2e5nvzG1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
Jubiquitin_2e5nvzJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_2ECOD (1.6)
BSkp1_POZ_1e5nvzB1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
ESkp1_POZ_1e5nvzE1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
HSkp1_POZ_1e5nvzH1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)
KSkp1_POZ_1e5nvzK1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: Skp1_POZ_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)
C1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
F2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)
F1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
I2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)
I1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
L2.60.40.780 Mainly Beta Sandwich Immunoglobulin-like von Hippel-Lindau disease tumour suppressor, beta domainCATH (4.3.0)
L1.10.750.10 Mainly Alpha Orthogonal Bundle Elongin C Chain C, domain 1CATH (4.3.0)
A3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
D3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
G3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
J3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
B3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
E3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
H3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)
K3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, F, I, L
PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1].Domain
C, F, I, L
PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA.Domain
A, D, G, J
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
B, E, H, K
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F, I, L
Von Hippel-Lindau disease tumor suppressor
A, D, G, J
Elongin-B
B, E, H, K
Elongin-C

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C, F, I, L
PharosP40337
A, D, G, J
PharosQ15370
B, E, H, K
PharosQ15369