5NHR
CRYSTAL STRUCTURE OF THE Activin receptor type-2B LIGAND BINDING DOMAIN IN COMPLEX WITH BIMAGRUMAB FV, CUBIC CRYSTAL FORM
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Thera-SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth C] | SCOP2B Superfamily | Snake toxin-like | 8042166 | 3000545 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Snake toxin-like | 8042166 | 3000545 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | V-set_3 | e5nhrL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
C [auth B] | V-set_3 | e5nhrB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
B [auth H] | V-set_8 | e5nhrH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth A] | V-set_8 | e5nhrA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
E [auth C] | Activin_recp | e5nhrC1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: Activin_recp | ECOD (1.6) |
F [auth D] | Activin_recp | e5nhrD1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: Activin_recp | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
E [auth C] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
F [auth D] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth L], C [auth B] | Bimagrumab Fv | V-LAMBDA | Homo sapiens (human) | IGLV2-23*01, IGLJ2*01, IGLJ3*02, IGLJ3*01 | V-DOMAIN V-LAMBDA | IG | FV-VH_V-LAMBDA | IMGT (202432-0) |
B [auth H], D [auth A] | Bimagrumab Fv | VH | Homo sapiens (human) | IGHV1-2*02, IGHJ4*01, IGHJ5*01, IGHJ5*02, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | IG | FV-VH_V-LAMBDA | IMGT (202432-0) |
E [auth C], F [auth D] | ActRIIB receptor | ACVR2B | Homo sapiens (human) | ACVR2B*01 | R-LIKE-DOMAIN ACVR2B (Pr20-134) | RPI | ACVR2B | IMGT (202432-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth L], C [auth B] | Light Chain | IGLV2 | Lambda | activin receptor type-2b | SAbDab (2024-08-16) |
B [auth H], D [auth A] | Heavy Chain | IGHV1 | - | activin receptor type-2b | SAbDab (2024-08-16) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
A [auth L], C [auth B] | Bimagrumab | ACVR2B | Therapeutic SAbDab (2024-08-16) |
B [auth H], D [auth A] | Bimagrumab | ACVR2B | Therapeutic SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth C], F [auth D] | PF01064 | Activin types I and II receptor domain (Activin_recp) | Activin types I and II receptor domain | This Pfam entry consists of both TGF-beta receptor types. This is an alignment of the hydrophilic cysteine-rich ligand-binding domains, Both receptor types, (type I and II) posses a 9 amino acid cysteine box, with the the consensus CCX{4-5}CN. The t ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth C], F [auth D] | IPR000472 | Activin types I and II receptor domain | Domain |
E [auth C], F [auth D] | IPR000719 | Protein kinase domain | Domain |
E [auth C], F [auth D] | IPR000333 | Ser/Thr protein kinase, TGFB receptor | Family |
E [auth C], F [auth D] | IPR045860 | Snake toxin-like superfamily | Homologous Superfamily |
E [auth C], F [auth D] | IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily |
E [auth C], F [auth D] | IPR008271 | Serine/threonine-protein kinase, active site | Active Site |