5M6X
Crystal Structure of human RhoGAP mutated in its arginine finger (R85A) in complex with RhoA.GDP.MgF3- human
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5m6xa_ | All alpha proteins | GTPase activation domain, GAP | GTPase activation domain, GAP | BCR-homology GTPase activation domain (BH-domain) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth H] | d5m6xh_ | All alpha proteins | GTPase activation domain, GAP | GTPase activation domain, GAP | BCR-homology GTPase activation domain (BH-domain) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5m6xb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth I] | d5m6xi_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | GTPase activation domain, GAP | 8038518 | 3001163 | SCOP2B (2022-06-29) |
C [auth H] | SCOP2B Superfamily | GTPase activation domain, GAP | 8038518 | 3001163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
D [auth I] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RhoGAP | e5m6xA1 | A: alpha bundles | X: GTPase activation domain, GAP (From Topology) | H: GTPase activation domain, GAP (From Topology) | T: GTPase activation domain, GAP | F: RhoGAP | ECOD (1.6) |
C [auth H] | RhoGAP | e5m6xH1 | A: alpha bundles | X: GTPase activation domain, GAP (From Topology) | H: GTPase activation domain, GAP (From Topology) | T: GTPase activation domain, GAP | F: RhoGAP | ECOD (1.6) |
B | Ras | e5m6xB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
D [auth I] | Ras | e5m6xI1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.555.10 | Mainly Alpha | Orthogonal Bundle | Phosphatidylinositol 3-kinase | Chain A | CATH (4.3.0) |
C [auth H] | 1.10.555.10 | Mainly Alpha | Orthogonal Bundle | Phosphatidylinositol 3-kinase | Chain A | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
D [auth I] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth H] | PF00620 | RhoGAP domain (RhoGAP) | RhoGAP domain | GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. | Domain |
B, D [auth I] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth H] | IPR001251 | CRAL-TRIO lipid binding domain | Domain |
A, C [auth H] | IPR000198 | Rho GTPase-activating protein domain | Domain |
A, C [auth H] | IPR036865 | CRAL-TRIO lipid binding domain superfamily | Homologous Superfamily |
A, C [auth H] | IPR008936 | Rho GTPase activation protein | Homologous Superfamily |
A, C [auth H] | IPR049592 | Rho GTPase-activating protein 1, RhoGAP domain | Domain |
B, D [auth I] | IPR001806 | Small GTPase | Family |
B, D [auth I] | IPR003578 | Small GTPase Rho | Family |
B, D [auth I] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
B, D [auth I] | IPR005225 | Small GTP-binding domain | Domain |