Annotations: 5M30

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5m30d1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Alpaca (Vicugna pacos ) [TaxId: 30538 ],	SCOPe (2.08)
D	d5m30d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Alpaca (Vicugna pacos ) [TaxId: 30538 ],	SCOPe (2.08)
E	d5m30e1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Alpaca (Vicugna pacos ) [TaxId: 30538 ],	SCOPe (2.08)
E	d5m30e2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Alpaca (Vicugna pacos ) [TaxId: 30538 ],	SCOPe (2.08)
F	d5m30f1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Alpaca (Vicugna pacos ) [TaxId: 30538 ],	SCOPe (2.08)
F	d5m30f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Alpaca (Vicugna pacos ) [TaxId: 30538 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UNK_F_TYPE	e5m30B2	A: beta sandwiches	X: jelly-roll	H: TssK C-terminal domain (From Topology)	T: TssK C-terminal domain	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e5m30B1	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e5m30B3	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e5m30C2	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e5m30C1	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5m30A2	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e5m30A1	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
D	V-set_1	e5m30D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_1	ECOD (1.6)
E	V-set_1	e5m30E1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_1	ECOD (1.6)
F	V-set_1	e5m30F1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
E	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
F	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
D, E, F	Heavy Chain	IGHV1	-	type vi secretion protein	SAbDab (2024-10-25)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR010263	Type VI secretion system TssK	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.