Annotations: 5LYN

Structure of the Tpr Domain of Sgt2 in complex with yeast Ssa1 peptide fragment

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SBP_bac_1	e5lynB1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
A	SBP_bac_1	e5lynA1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
A	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00515	Tetratricopeptide repeat (TPR_1)	Tetratricopeptide repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	PRO-THR-VAL-GLU-GLU-VAL-ASP	protein binding binding heat shock protein binding RNA binding tRNA binding nucleic acid binding ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding protein binding binding heat shock protein binding RNA binding tRNA binding nucleic acid binding ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process protein refolding protein maturation protein folding protein metabolic process catabolic process proteasomal protein catabolic process protein catabolic process mitochondria-associated ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process cellular component disassembly protein-containing complex organization protein-containing complex disassembly protein-RNA complex disassembly cellular component organization organelle organization protein-RNA complex organization organelle disassembly cellular component organization or biogenesis stress granule disassembly cellular response to stimulus cellular response to heat response to stimulus cellular response to stress response to stress response to heat response to abiotic stimulus response to temperature stimulus response to oxygen levels establishment of protein localization cellular localization nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization intercellular transport import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus intracellular protein localization intracellular protein transport clathrin coat disassembly vesicle-mediated transport vesicle uncoating protein depolymerization protein polyubiquitination protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal translation protein biosynthetic process cytoplasmic translation protein targeting SRP-dependent cotranslational protein targeting to membrane protein transmembrane transport cotranslational protein targeting to membrane establishment of protein localization to endoplasmic reticulum establishment of protein localization to membrane intracellular protein transmembrane transport localization within membrane protein targeting to membrane transmembrane transport SRP-dependent cotranslational protein targeting to membrane, translocation protein targeting to ER	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane vacuolar membrane membrane-bounded organelle storage vacuole lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane vacuolar membrane membrane-bounded organelle storage vacuole lytic vacuole vacuole intracellular membrane-bounded organelle fungal-type vacuole intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle organelle membrane fungal-type vacuole membrane fungal-type cell wall external encapsulating structure extracellular region cell wall protein-containing complex transcription regulator complex transcription repressor complex nucleus
A, B	Small glutamine-rich tetratricopeptide repeat-containing protein 2	Hsp90 protein binding protein binding binding heat shock protein binding molecular adaptor activity Hsp70 protein binding protein-folding chaperone binding identical protein binding	establishment of protein localization cellular localization establishment of protein localization to membrane protein targeting post-translational protein targeting to endoplasmic reticulum membrane localization within membrane establishment of localization protein targeting to membrane localization establishment of protein localization to organelle cellular process establishment of protein localization to endoplasmic reticulum protein targeting to ER response to stimulus establishment of protein localization cellular localization establishment of protein localization to membrane protein targeting post-translational protein targeting to endoplasmic reticulum membrane localization within membrane establishment of localization protein targeting to membrane localization establishment of protein localization to organelle cellular process establishment of protein localization to endoplasmic reticulum protein targeting to ER response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex TRC complex ER membrane insertion complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR018181	Heat shock protein 70, conserved site	Conserved Site
C, D	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
C, D	IPR029048	Heat shock protein 70kD, C-terminal domain superfamily	Homologous Superfamily
C, D	IPR029047	Heat shock protein 70kD, peptide-binding domain superfamily	Homologous Superfamily
C, D	IPR013126	Heat shock protein 70 family	Family
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR047150	SGT	Family
A, B	IPR019734	Tetratricopeptide repeat	Repeat
A, B	IPR032374	SGTA, homodimerisation domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.