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 5LY8 | pdb_00005ly8

Structure of the CBM2 module of Lactobacillus casei BL23 phage J-1 evolved Dit.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADit-like_CBM2e5ly8A1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Galactose-binding domain-likeT: Galactose-binding domain-likeF: Dit-like_CBM2ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21869Distal tail component, second carbohydrate binding domain (Dit-like_CBM2)Distal tail component, second carbohydrate binding domainThis domain is found in the distal tail component from Lactobacillus phage J-1 (Dit), which is involved in host recognition. This entry represents the second putative carbohydrate binding domain (CBM2). It folds into a beta-sandwich with two beta-she ...This domain is found in the distal tail component from Lactobacillus phage J-1 (Dit), which is involved in host recognition. This entry represents the second putative carbohydrate binding domain (CBM2). It folds into a beta-sandwich with two beta-sheets gathering 12 beta-strands [1]. This domain usually appears associated to Pfam:PF05709.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Tail component - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR054064Distal tail component, second carbohydrate binding domainDomain
IPR006520Distal tail protein, N-terminalDomain
IPR008841Siphovirus-type tail component, RIFT-related domainDomain
IPR054738Siphovirus-type tail component, C-terminal domainDomain