5LLW
Bacteriophytochrome activated diguanylyl cyclase from Idiomarina species A28L
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00990 | e5llwB2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00990 | ECOD (1.6) |
A [auth B] | PF00360 | e5llwB3 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF00360 | ECOD (1.6) |
A [auth B] | PF01590 | e5llwB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF01590 | ECOD (1.6) |
A [auth B] | PF08446 | e5llwB4 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF08446 | ECOD (1.6) |
B [auth A] | PF00990 | e5llwA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00990 | ECOD (1.6) |
B [auth A] | PF00360 | e5llwA3 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF00360 | ECOD (1.6) |
B [auth A] | PF01590 | e5llwA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF01590 | ECOD (1.6) |
B [auth A] | PF08446 | e5llwA4 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PF08446 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF01590 | GAF domain (GAF) | GAF domain | This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyse ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regul ... | Domain |
A [auth B], B [auth A] | PF00360 | Phytochrome region (PHY) | Phytochrome region | Phytochromes are red/far-red photochromic biliprotein photoreceptors which regulate plant development. They are widely represented in both photosynthetic and non-photosynthetic bacteria and are known in a variety of fungi. Although sequence similarit ... | Domain |
A [auth B], B [auth A] | PF00990 | Diguanylate cyclase, GGDEF domain (GGDEF) | Diguanylate cyclase, GGDEF domain | This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain [1] and has diguanylate cyclase activity [4]. This observation correlates with ... | Domain |
A [auth B], B [auth A] | PF08446 | PAS fold (PAS_2) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR013515 | Phytochrome, central region | Domain |
A [auth B], B [auth A] | IPR000160 | GGDEF domain | Domain |
A [auth B], B [auth A] | IPR043150 | Phytochrome, PHY domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily |
A [auth B], B [auth A] | IPR013654 | PAS fold-2 | Domain |
A [auth B], B [auth A] | IPR035965 | PAS domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR003018 | GAF domain | Domain |
A [auth B], B [auth A] | IPR029016 | GAF-like domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR001294 | Phytochrome | Family |
A [auth B], B [auth A] | IPR029787 | Nucleotide cyclase | Homologous Superfamily |
A [auth B], B [auth A] | IPR016132 | Phytochrome chromophore attachment domain | Domain |