Annotations: 5LDI

Crystal structure of E.coli LigT in apo form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5ldia_	Alpha and beta proteins (a+b)	LigT-like	LigT-like	automated matches	automated matches	(Escherichia coli BL21(DE3) ) [TaxId: 469008 ],	SCOPe (2.08)
B	d5ldib_	Alpha and beta proteins (a+b)	LigT-like	LigT-like	automated matches	automated matches	(Escherichia coli BL21(DE3) ) [TaxId: 469008 ],	SCOPe (2.08)
C	d5ldic_	Alpha and beta proteins (a+b)	LigT-like	LigT-like	automated matches	automated matches	(Escherichia coli BL21(DE3) ) [TaxId: 469008 ],	SCOPe (2.08)
D	d5ldid_	Alpha and beta proteins (a+b)	LigT-like	LigT-like	automated matches	automated matches	(Escherichia coli BL21(DE3) ) [TaxId: 469008 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	2'-5' RNA ligase LigT	8086041	4000652	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	LigT-like	8086042	3001408	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DHHA1	e5ldiA1	A: alpha arrays	X: Alpha-crystallin B chain N-terminal domain	H: profilin-like	T: C-terminal domain in DHH phosphoesterases	F: DHHA1	ECOD (v295.2)
B	DHHA1	e5ldiB1	A: alpha arrays	X: Alpha-crystallin B chain N-terminal domain	H: profilin-like	T: C-terminal domain in DHH phosphoesterases	F: DHHA1	ECOD (v295.2)
C	DHHA1	e5ldiC1	A: alpha arrays	X: Alpha-crystallin B chain N-terminal domain	H: profilin-like	T: C-terminal domain in DHH phosphoesterases	F: DHHA1	ECOD (v295.2)
D	DHHA1	e5ldiD1	A: alpha arrays	X: Alpha-crystallin B chain N-terminal domain	H: profilin-like	T: C-terminal domain in DHH phosphoesterases	F: DHHA1	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.1140.10	Alpha Beta	Alpha-Beta Complex	Cyclic Phosphodiesterase	Chain: A,	CATH (4.3.0)
B	3.90.1140.10	Alpha Beta	Alpha-Beta Complex	Cyclic Phosphodiesterase	Chain: A,	CATH (4.3.0)
C	3.90.1140.10	Alpha Beta	Alpha-Beta Complex	Cyclic Phosphodiesterase	Chain: A,	CATH (4.3.0)
D	3.90.1140.10	Alpha Beta	Alpha-Beta Complex	Cyclic Phosphodiesterase	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13563	2'-5' RNA ligase superfamily (2_5_RNA_ligase2)	2'-5' RNA ligase superfamily	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	RNA 2',3'-cyclic phosphodiesterase	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity RNA 2',3'-cyclic 3'-phosphodiesterase activity hydrolase activity catalytic activity 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity cyclic-nucleotide phosphodiesterase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR009097	Cyclic phosphodiesterase	Homologous Superfamily
A, B, C, D	IPR004175	RNA 2',3'-cyclic phosphodiesterase	Family

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