5LCW
Cryo-EM structure of the Anaphase-promoting complex/Cyclosome, in complex with the Mitotic checkpoint complex (APC/C-MCC) at 4.2 angstrom resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
L | SCOP2B Superfamily | galactose-binding domain-like | 8037020 | 3000087 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Anaphase-promoting complex subunit 13 | 8093172 | 3002688 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Winged helix DNA-binding domain | 8084656 | 3000034 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | WD40 repeat-like | 8106388 | 3001694 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | WD40 repeat-like | 8106388 | 3001694 | SCOP2B (2022-06-29) |
W [auth Z] | SCOP2B Superfamily | HORMA/p31comet-like | 8004003 | 3000150 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RING/U-box like | 8082719 | 3000160 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Anaphase-promoting complex subunit 16-like | 8053719 | 3002218 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
T [auth W] | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1858_3rd | e5lcwA1 | A: beta sandwiches | X: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 C-terminal domain | F: KOG1858_3rd | ECOD (1.6) |
A | ANAPC1 | e5lcwA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC1 | ECOD (1.6) |
A | KOG1858_2nd | e5lcwA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: KOG1858_2nd | ECOD (1.6) |
A | KOG1858_1st | e5lcwA5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 first helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 first helical domain | F: KOG1858_1st | ECOD (1.6) |
A | KOG1858_4th | e5lcwA4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 second helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 second helical domain | F: KOG1858_4th | ECOD (1.6) |
L | ANAPC10 | e5lcwL1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: ANAPC10 | ECOD (1.6) |
N | ANAPC2 | e5lcwN4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: ANAPC2 | ECOD (1.6) |
N | Cullin_4th | e5lcwN5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
N | Cullin_2nd | e5lcwN2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
N | KOG2165 | e5lcwN1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2165 | ECOD (1.6) |
N | Cullin_3rd | e5lcwN3 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
O | Apc5_N | e5lcwO2 | A: alpha arrays | X: SHQ1 C-terminal domain-like | H: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology) | T: Anaphase-promoting complex subunit 5 N-terminal domain | F: Apc5_N | ECOD (1.6) |
O | ANAPC5 | e5lcwO1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC5 | ECOD (1.6) |
Q | ANAPC4_WD40_2 | e5lcwQ1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_2 | ECOD (1.6) |
R | ANAPC4_WD40_6 | e5lcwR1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_6 | ECOD (1.6) |
S | Mad3_BUB1_I | e5lcwS1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Mad3_BUB1_I | ECOD (1.6) |
V [auth Y] | TPR_11_9 | e5lcwY1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_9 | ECOD (1.6) |
U [auth X] | TPR_19,ANAPC8 | e5lcwX1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_19,ANAPC8 | ECOD (1.6) |
W [auth Z] | HORMA | e5lcwZ1 | A: a+b two layers | X: The spindle assembly checkpoint protein mad2 (From Topology) | H: The spindle assembly checkpoint protein mad2 (From Topology) | T: The spindle assembly checkpoint protein mad2 | F: HORMA | ECOD (1.6) |
B | zf-rbx1 | e5lcwB1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-rbx1 | ECOD (1.6) |
P | KOG1155 | e5lcwP2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG1155 | ECOD (1.6) |
P | ANAPC8 | e5lcwP3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC8 | ECOD (1.6) |
C | KOG1155 | e5lcwC2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG1155 | ECOD (1.6) |
C | ANAPC8 | e5lcwC3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC8 | ECOD (1.6) |
F | TPR_11_7 | e5lcwF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
H | TPR_11_7 | e5lcwH1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
I | ANAPC4_WD40 | e5lcwI2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40 | ECOD (1.6) |
I | ANAPC4 | e5lcwI1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology) | T: Helical bundle domain in anaphase-promoting complex subunit 4 | F: ANAPC4 | ECOD (1.6) |
J | TPR_11_7 | e5lcwJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
K | TPR_11_7 | e5lcwK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20518 | Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN) | Anaphase-promoting complex subunit 1 middle domain | - | Repeat | |
PF21282 | APC1 beta sandwich domain (APC1_3rd) | APC1 beta sandwich domain | This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ... | Domain | |
PF03256 | Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10) | Anaphase-promoting complex, subunit 10 (APC10) | - | Family | |
PF05839 | Apc13p protein (Apc13p) | Apc13p protein | - | Family | |
PF00888 | Cullin family (Cullin) | Cullin family | - | Repeat | |
PF08672 | Anaphase promoting complex (APC) subunit 2 (ANAPC2) | Anaphase promoting complex (APC) subunit 2 | The anaphase promoting complex or cyclosome (APC2) is an E3 ubiquitin ligase which is part of the SCF family of ubiquitin ligases. Ubiquitin ligases catalyse the transfer of ubiquitin from the ubiquitin conjugating enzyme (E2), to the substrate prot ... | Domain | |
PF12862 | Anaphase-promoting complex subunit 5 (ANAPC5) | Anaphase-promoting complex subunit 5 | - | Repeat | |
PF21371 | Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N) | Anaphase-promoting complex subunit 5, N-terminal domain | This domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ... | Domain | |
PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF08311 | Mad3/BUB1 homology region 1 (Mad3_BUB1_I) | Mad3/BUB1 homology region 1 | - | Repeat | |
U [auth X], V [auth Y] | PF13181 | Tetratricopeptide repeat (TPR_8) | Tetratricopeptide repeat | - | Repeat |
U [auth X], V [auth Y] | PF13432 | Tetratricopeptide repeat (TPR_16) | Tetratricopeptide repeat | - | Repeat |
W [auth Z] | PF02301 | HORMA domain (HORMA) | HORMA domain | The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins. MAD2 is a spindle ... | Domain |
PF04049 | Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8) | Anaphase promoting complex subunit 8 / Cdc23 | - | Repeat | |
PF15243 | Anaphase-promoting complex subunit 15 (ANAPC15) | Anaphase-promoting complex subunit 15 | - | Family | |
PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
PF00515 | Tetratricopeptide repeat (TPR_1) | Tetratricopeptide repeat | - | Repeat | |
G, T [auth W] | PF10471 | Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26) | Anaphase-promoting complex APC subunit CDC26 | - | Family |
PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 (ANAPC4) | Anaphase-promoting complex, cyclosome, subunit 4 | Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein s ... | Domain | |
PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat | |
PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat |