5L2E | pdb_00005l2e

Crystal structure of rat Glutamate receptor delta-2 extracellular domain

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CANF_receptore5l2eC2 A: a/b three-layered sandwichesX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: ANF_receptorECOD (v294.1)
COTCace_Ne5l2eC5 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Class I glutamine amidotransferase-likeF: OTCace_NECOD (v294.1)
BANF_receptore5l2eB3 A: a/b three-layered sandwichesX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: ANF_receptorECOD (v294.1)
BPI3Kae5l2eB2 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: PI3KaECOD (v294.1)
BOTCace_Ne5l2eB5 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Class I glutamine amidotransferase-likeF: OTCace_NECOD (v294.1)
ALig_chan-Glu_bde5l2eA1 A: a/b three-layered sandwichesX: F-type ATP synthase subunit bH: Bacterial cell wall synthesis membrane enzyme MraY-relatedT: Bacterial cell wall synthesis membrane enzyme MraY-relatedF: Lig_chan-Glu_bdECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, B, C
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A, B, C
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Glutamate receptor ionotropic, delta-2,Glutamate receptor ionotropic, delta-2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, B, C
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, B, C
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, B, C
IPR015683Ionotropic glutamate receptorFamily
A, B, C
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, B, C
IPR001828Receptor, ligand binding regionDomain