5L12
Crystal structure of 2C-methyl-D-erythritol 2,4-clycodiphosphate synthase from BURKHOLDERIA PSEUDOMALLEI double mutant
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5l12a_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | IpsF-like | automated matches | (Burkholderia pseudomallei 1106a ) [TaxId: 357348 ], | SCOPe (2.08) |
B | d5l12b_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | IpsF-like | automated matches | (Burkholderia pseudomallei 1106a ) [TaxId: 357348 ], | SCOPe (2.08) |
C | d5l12c_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | IpsF-like | automated matches | (Burkholderia pseudomallei 1106a ) [TaxId: 357348 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | IpsF-like | 8097081 | 4003475 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | IpsF-like | 8097082 | 3000926 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | IpsF-like | 8097082 | 3000926 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | IpsF-like | 8097082 | 3000926 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YgbB | e5l12A1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
B | YgbB | e5l12B1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
C | YgbB | e5l12C1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02542 | YgbB family (YgbB) | YgbB family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036571 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily | Homologous Superfamily | |
IPR003526 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | Domain | |
IPR020555 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site | Conserved Site |