5L0Q
Crystal structure of the complex between ADAM10 D+C domain and a conformation specific mAb 8C7.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF07654 | e5l0qC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C | PF07686 | e5l0qC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F | PF07654 | e5l0qF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F | PF07686 | e5l0qF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
A | PF21299 | e5l0qA2 | A: few secondary structure elements | X: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins (From Topology) | H: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins (From Topology) | T: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins | F: PF21299 | ECOD (1.6) |
A | PF00200 | e5l0qA1 | A: few secondary structure elements | X: Blood coagulation inhibitor (disintegrin) (From Topology) | H: Blood coagulation inhibitor (disintegrin) (From Topology) | T: Blood coagulation inhibitor (disintegrin) | F: PF00200 | ECOD (1.6) |
D | PF21299 | e5l0qD2 | A: few secondary structure elements | X: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins (From Topology) | H: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins (From Topology) | T: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins | F: PF21299 | ECOD (1.6) |
D | PF00200 | e5l0qD1 | A: few secondary structure elements | X: Blood coagulation inhibitor (disintegrin) (From Topology) | H: Blood coagulation inhibitor (disintegrin) (From Topology) | T: Blood coagulation inhibitor (disintegrin) | F: PF00200 | ECOD (1.6) |
B | PF07654 | e5l0qB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B | PF07686 | e5l0qB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E | PF07654 | e5l0qE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E | PF07686 | e5l0qE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
mAb 8C7 | VH-CH1 | Homo sapiens (human) | IGHV1-87*01, IGHJ4*01, IGHG1*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202428-0) | |
Disintegrin and metalloproteinase domain-containing protein 10 | null | Bos taurus (bovine) | - | - | RPI | ALB | IMGT (202428-0) | |
mAb 8C7 | L-KAPPA | Homo sapiens (human) | IGKV5-48*01, IGKJ4*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202428-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | disintegrin and metalloproteinase domain-containing protein10 | SAbDab (2024-07-12) | |
Light Chain | IGKV5 | Kappa | disintegrin and metalloproteinase domain-containing protein10 | SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21299 | ADAM10, cysteine-rich domain (ADAM10_Cys-rich) | ADAM10, cysteine-rich domain | Disintegrin and metalloproteinase domain-containing protein 10 (ADAM10) is a transmembrane endopeptidase responsible for the proteolytic release of several cell-surface proteins, including the membrane-bound precursor of TNF-alpha, ligands and recept ... | Domain | |
PF00200 | Disintegrin (Disintegrin) | Disintegrin | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR034025 | ADAM10/ADAM17 catalytic domain | Domain | |
IPR001762 | Disintegrin domain | Domain | |
IPR001590 | Peptidase M12B, ADAM/reprolysin | Domain | |
IPR036436 | Disintegrin domain superfamily | Homologous Superfamily | |
IPR024079 | Metallopeptidase, catalytic domain superfamily | Homologous Superfamily | |
IPR049038 | ADAM10, cysteine-rich domain | Domain |