5KZT
Listeria monocytogenes OppA bound to peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Phosphate binding protein-like | 8072686 | 4000229 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Type 2 solute binding protein-like | 8072687 | 3000083 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8072687 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SBP_bac_5_1st | e5kztA1 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: SBP_bac_5_1st | ECOD (1.6) |
A | SBP_bac_5_3rd | e5kztA3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_3rd | ECOD (1.6) |
A | SBP_bac_5_2nd | e5kztA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_2nd | ECOD (1.6) |
B | SBP_bac_5_1st | e5kztB3 | A: a+b two layers | X: Alpha-beta plaits | H: Oligo-peptide binding protein (OPPA) insertion domain (From Topology) | T: Oligo-peptide binding protein (OPPA) insertion domain | F: SBP_bac_5_1st | ECOD (1.6) |
B | SBP_bac_5_3rd | e5kztB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_3rd | ECOD (1.6) |
B | SBP_bac_5_2nd | e5kztB2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_5_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
A | 3.90.76.10 | Alpha Beta | Alpha-Beta Complex | Dipeptide-binding Protein | domain 1 | CATH (4.3.0) |
A | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (4.3.0) |
B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
B | 3.90.76.10 | Alpha Beta | Alpha-Beta Complex | Dipeptide-binding Protein | domain 1 | CATH (4.3.0) |
B | 3.10.105.10 | Alpha Beta | Roll | Dipeptide-binding Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00496 | Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5) | Bacterial extracellular solute-binding proteins, family 5 Middle | The borders of this family are based on the PDBSum definitions of the domain edges for Swiss:P06202. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Peptide/nickel transport system substrate-binding protein | - |
| ||
Hexamer peptide: SER-ASP-GLU-SER-LYS-GLY | - | - | - | |
Hexamer peptide: SER-ASP-GLU-SER-SER-GLY | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000914 | Solute-binding protein family 5 domain | Domain | |
IPR039424 | Solute-binding protein family 5 | Family | |
IPR030678 | Peptide/nickel binding protein, MppA-type | Family | |
IPR023765 | Solute-binding protein family 5, conserved site | Conserved Site |