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 5JZI | pdb_00005jzi

Crystal structure of 1406 TCR bound to HLA-A2 with HCV 1406-1415 antigen peptide

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JAcetyltransf_1e5jziJ1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)
H [auth E]Acetyltransf_1e5jziE1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)
IAcetyltransf_1e5jziI1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)
G [auth D]Acetyltransf_1e5jziD1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)
E [auth G]Acetyltransf_1e5jziG1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)
BAcetyltransf_1e5jziB1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)
D [auth F]Acetyltransf_1e5jziF1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)
AAcetyltransf_1e5jziA1 A: alpha arraysX: Profilin-likeH: NucleotidyltransferaseT: NucleotidyltransferaseF: Acetyltransf_1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
J2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
H [auth E]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
I2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
G [auth D]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
E [auth G]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D [auth F]3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
D [auth F]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
H [auth E],
J		TR 1406 TR-BETA-2 - TRBV25-1*01, TRBJ2-7*01, TRBC2*01, TRBC2*02 V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 TR TR-ALPHA_BETA-2 IMGT (202640-0)
G [auth D],
I		TR 1406 TR-ALPHA - TRAV38-2/DV8*01, TRAJ30*01, TRAC*01 V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA TR TR-ALPHA_BETA-2 IMGT (202640-0)
B,
E [auth G]		MH1 HLA-A2 B2M - B2M*01, B2M*02 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202640-0)
A,
D [auth F]		MH1 HLA-A2 I-ALPHA - HLA-A*0201, HLA-A*0203, HLA-A*0204, HLA-A*0207, HLA-A*0209, HLA-A*0212, HLA-A*0213, HLA-A*0216, HLA-A*0217, HLA-A*0218, HLA-A*0222, HLA-A*0224, HLA-A*0226, HLA-A*0233, HLA-A*0266, HLA-A*0289, HLA-A*0268, HLA-A*0265, HLA-A*0277, HLA-A*0260, HLA-A*9232, HLA-A*9234, HLA-A*9235 G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202640-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth D],
I		PF09291Domain of unknown function (DUF1968) (DUF1968)Domain of unknown function (DUF1968)Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined. Domain
B,
E [auth G]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
B,
E [auth G]		PF09291Domain of unknown function (DUF1968) (DUF1968)Domain of unknown function (DUF1968)Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined. Domain
A,
D [auth F]		PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
A,
D [auth F]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth E],
J		HCV1406 TCR beta chain---
G [auth D],
I		HCV1406 TCR alpha chain---
C,
F [auth H]		KLV peptide---
B,
E [auth G]		Beta-2-microglobulin
A,
D [auth F]		HLA class I histocompatibility antigen, A-2 alpha chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
E [auth G]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B,
E [auth G]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B,
E [auth G]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B,
E [auth G]		IPR007110Immunoglobulin-like domainDomain
B,
E [auth G]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B,
E [auth G]		IPR003597Immunoglobulin C1-setDomain
B,
E [auth G]		IPR015707Beta-2-MicroglobulinFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B,
E [auth G]		:  P61769