5JPW

Molecular basis for protein recognition specificity of the DYNLT1/Tctex1 canonical binding groove. Characterization of the interaction with activin receptor IIB

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Tctex-1-like	8044666	4004068	SCOP2 (2022-06-29)
A	SCOP2 Family	Cytoplasmic dynein 1 IC2	8046596	4005181	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DLC-like	8051841	3000821	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dynein intermediate chain-like	8051842	3002038	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	DLC-like	8051841	3000821	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dynein intermediate chain-like	8051842	3002038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Tctex-1	e5jpwA1	A: a+b two layers	X: DLC (From Topology)	H: DLC (From Topology)	T: DLC	F: Tctex-1	ECOD (1.6)
B	Tctex-1	e5jpwB1	A: a+b two layers	X: DLC (From Topology)	H: DLC (From Topology)	T: DLC	F: Tctex-1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF11540	Cytoplasmic dynein 1 intermediate chain 2 (Dynein_IC2)	Cytoplasmic dynein 1 intermediate chain 2	-	Family
A, B	PF03645	Tctex-1 family (Tctex-1)	Tctex-1 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Dynein light chain Tctex-type 1,Cytoplasmic dynein 1 intermediate chain 2	protein binding binding dynein heavy chain binding dynein light chain binding microtubule motor activity cytoskeletal motor activity ATP-dependent activity dynein intermediate chain binding identical protein binding	microtubule-based movement microtubule-based process cellular process cellular localization transport intracellular transport establishment of localization localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport protein localization regulation of biological process microtubule-based movement microtubule-based process cellular process cellular localization transport intracellular transport establishment of localization localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport protein localization regulation of biological process establishment of protein localization nitrogen compound transport biological process involved in interspecies interaction between organisms biological regulation biological process involved in interaction with host biological process involved in symbiotic interaction regulation of viral process regulation by virus of viral protein levels in host cell intracellular transport of viral protein in host cell protein transport symbiont intracellular protein transport in host cellular macromolecule localization macromolecule localization viral process regulation of biological quality establishment of organelle localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization cell cycle cellular component organization or biogenesis microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation cytoskeleton organization cellular response to stimulus regulation of signaling regulation of cellular process response to stimulus signaling regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway signal transduction regulation of G protein-coupled receptor signaling pathway developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cell division symbiont entry into host cell symbiont entry into host viral life cycle microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus transport of virus transport of viral material towards nucleus regulation of developmental process cellular developmental process negative regulation of biological process cell development regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development negative regulation of neurogenesis neurogenesis cell differentiation negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of developmental process negative regulation of cell development negative regulation of multicellular organismal process	membrane-bounded organelle organelle cellular anatomical entity vesicle intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol membrane-bounded organelle organelle cellular anatomical entity vesicle intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex host cellular component host cell Golgi apparatus intracellular membrane-bounded organelle endomembrane system extracellular region intracellular vesicle cytoplasmic vesicle secretory vesicle vesicle lumen membrane-enclosed lumen cytoplasmic vesicle lumen secretory granule lumen intracellular organelle lumen organelle lumen secretory granule spindle cytoplasmic microtubule ficolin-1-rich granule ficolin-1-rich granule lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR025956	Cytoplasmic dynein 1 intermediate chain 1/2	Family
A, B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR001680	WD40 repeat	Repeat
A, B	IPR050687	Dynein Intermediate Chain	Family
A, B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B	IPR038586	Tctex-1-like superfamily	Homologous Superfamily
A, B	IPR005334	Dynein light chain Tctex-1 like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P63172	Beckwith-Wiedemann syndrome psoriasis astrocytic tumor dermatomyositis glioblastoma malignant glioma oligodendroglioma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor diabetes mellitus juvenile dermatomyositis malignant pancreatic neoplasm open-angle glaucoma Beckwith-Wiedemann syndrome psoriasis astrocytic tumor dermatomyositis glioblastoma malignant glioma oligodendroglioma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor diabetes mellitus juvenile dermatomyositis malignant pancreatic neoplasm open-angle glaucoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor cutaneous lupus erythematosus ductal breast carcinoma in situ malignant ependymoma medulloblastoma osteosarcoma pilocytic astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.