5JLD
Crystal Structure of Arginyl-tRNA Synthetase from Plasmodium falciparum (PfRRS)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DALR_1,tRNA-synt_1d | e5jldA3 | A: alpha bundles | X: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: DALR_1,tRNA-synt_1d | ECOD (1.6) |
A | Arg_tRNA_synt_N | e5jldA1 | A: a+b two layers | X: RRF/tRNA synthetase additional domain-like | H: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain (From Topology) | T: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain | F: Arg_tRNA_synt_N | ECOD (1.6) |
A | tRNA-synt_1d | e5jldA2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1d | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03485 | Arginyl tRNA synthetase N terminal domain (Arg_tRNA_synt_N) | Arginyl tRNA synthetase N terminal domain | This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [1]. | Domain | |
PF00750 | tRNA synthetases class I (R) (tRNA-synt_1d) | tRNA synthetases class I (R) | - | Family | |
PF05746 | DALR anticodon binding domain (DALR_1) | DALR anticodon binding domain | This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036695 | Arginyl tRNA synthetase N-terminal domain superfamily | Homologous Superfamily | |
IPR005148 | Arginyl tRNA synthetase N-terminal domain | Domain | |
IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site | Conserved Site | |
IPR009080 | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Homologous Superfamily | |
IPR035684 | Arginyl-tRNA synthetase, catalytic core domain | Domain | |
IPR001278 | Arginine-tRNA ligase | Family | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily | |
IPR008909 | DALR anticodon binding | Domain |