Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyAtg31-like 8091085 3002486 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAtg31-like 8091085 3002486 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAPG17-like 8090314 3002427 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAPG17-like 8090314 3002427 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF07827e5jhfA1 A: beta sandwichesX: Atg29-Atg31 (From Topology)H: Atg29-Atg31 (From Topology)T: Atg29-Atg31F: EUF07827ECOD (1.6)
DEUF07827e5jhfD1 A: beta sandwichesX: Atg29-Atg31 (From Topology)H: Atg29-Atg31 (From Topology)T: Atg29-Atg31F: EUF07827ECOD (1.6)
BAtg31e5jhfB1 A: beta sandwichesX: Atg29-Atg31 (From Topology)H: Atg29-Atg31 (From Topology)T: Atg29-Atg31F: Atg31ECOD (1.6)
EAtg31e5jhfE1 A: beta sandwichesX: Atg29-Atg31 (From Topology)H: Atg29-Atg31 (From Topology)T: Atg29-Atg31F: Atg31ECOD (1.6)
CAPG17e5jhfC1 A: alpha bundlesX: Atg17 (From Topology)H: Atg17 (From Topology)T: Atg17F: APG17ECOD (1.6)
FAPG17e5jhfF1 A: alpha bundlesX: Atg17 (From Topology)H: Atg17 (From Topology)T: Atg17F: APG17ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.10.2570 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
D1.10.10.2570 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
B2.60.270.60 Mainly Beta Sandwich Mutm (Fpg) Protein Chain: A, domain 2CATH (4.3.0)
E2.60.270.60 Mainly Beta Sandwich Mutm (Fpg) Protein Chain: A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D
PF18388Atg29 N-terminal domain (ATG29_N)Atg29 N-terminal domainThis is the N-terminal domain found in fungal Atg proteins such as Atg29. In yeast, the induction of autophagy begins at a single perivacuolar site that is proximal to the vacuole, called the phagophore assembly site (PAS) [1]. Atg17-Atg29-Atg31 comp ...This is the N-terminal domain found in fungal Atg proteins such as Atg29. In yeast, the induction of autophagy begins at a single perivacuolar site that is proximal to the vacuole, called the phagophore assembly site (PAS) [1]. Atg17-Atg29-Atg31 complex (Atg1 complex) formation is a prerequisite for PAS assembly. Functional analysis indicate that the N-terminal half Atg29 can bind Atg31 [2].
Domain
B, E
PF09795Autophagy-related protein 31 (ATG31)Autophagy-related protein 31- Family
C, F
PF04108Autophagy protein ATG17-like domain (ATG17_like)Autophagy protein ATG17-like domainThis domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes [1,2]. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, i ...This domain is found in the autophagy-related proteins ATG17 and ATG11, conserved across eukaryotes [1,2]. ATG17 forms a complex with ATG29 and ATG31, critical for both PAS (preautophagosomal structure) formation and autophagy. Together with ATG13, it is required for ATG1 kinase activation [2,3]. ATG11 is a scaffold protein required for the cytoplasm-to-vacuole targeting (Cvt) pathway during starvation and to recruit ATG proteins to the pre-autophagosome. It is also required for ATG1 kinase activation. In many eukaryotes, ATG11 (the orthologue in mammals is RB1-inducible coiled-coil protein 1 (RB1CC1) and in S. pombe is Taz1-interacting factor 1 (taf1)) is essential for bulk autophagy, except in S.cerevisiae [2]. ATG17 and ATG11 are large similar proteins, both predicted to be almost entirely helical, containing conserved coiled-coil regions and lack obvious functional motifs [2,3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D
KLTH0D11660p-
B, E
KLTH0C07942p-
C, F
KLTH0D15642p-
G, H
Atg13 17BR-
I, J
Atg13 17LR-