5JBS
Conformational changes during monomer-to-dimer transition of Brucella suis VirB8
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5jbsa_ | Alpha and beta proteins (a+b) | Cystatin-like | NTF2-like | VirB8-like | automated matches | (Brucella suis 1330 ) [TaxId: 204722 ], | SCOPe (2.08) |
B | d5jbsb_ | Alpha and beta proteins (a+b) | Cystatin-like | NTF2-like | VirB8-like | automated matches | (Brucella suis 1330 ) [TaxId: 204722 ], | SCOPe (2.08) |
C | d5jbsc_ | Alpha and beta proteins (a+b) | Cystatin-like | NTF2-like | VirB8-like | automated matches | (Brucella suis 1330 ) [TaxId: 204722 ], | SCOPe (2.08) |
D | d5jbsd_ | Alpha and beta proteins (a+b) | Cystatin-like | NTF2-like | VirB8-like | automated matches | (Brucella suis 1330 ) [TaxId: 204722 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | NTF2-like | 8033551 | 3000472 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | NTF2-like | 8033551 | 3000472 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | NTF2-like | 8033551 | 3000472 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | NTF2-like | 8033551 | 3000472 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | VirB8 | e5jbsA1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: VirB8 | ECOD (1.6) |
B | VirB8 | e5jbsB1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: VirB8 | ECOD (1.6) |
C | VirB8 | e5jbsC1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: VirB8 | ECOD (1.6) |
D | VirB8 | e5jbsD1 | A: a+b two layers | X: Cystatin-like | H: NTF2-like (From Topology) | T: NTF2-like | F: VirB8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.450.230 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
B | 3.10.450.230 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
C | 3.10.450.230 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
D | 3.10.450.230 | Alpha Beta | Roll | Nuclear Transport Factor 2 | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04335 | VirB8 protein (VirB8) | VirB8 protein | VirB8 is a bacterial virulence protein with cytoplasmic, transmembrane, and periplasmic regions. It is thought that it is a primary constituent of a DNA transporter. The periplasmic region interacts with VirB9, VirB10, and itself [1]. This family als ... | Domain |