5JA9
Crystal structure of the HigB2 toxin in complex with Nb6
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d5ja9a1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
C [auth A] | d5ja9a2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D [auth B] | d5ja9b1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D [auth B] | d5ja9b2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | RelE | e5ja9C1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: RelE | ECOD (1.6) |
B [auth D] | RelE | e5ja9D1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: RelE | ECOD (1.6) |
C [auth A] | V-set_8 | e5ja9A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth B] | V-set_8 | e5ja9B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | Heavy Chain | IGHV1 | - | toxin higb-2 | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth D] | PF06296 | RelE toxin of RelE / RelB toxin-antitoxin system (RelE) | RelE toxin of RelE / RelB toxin-antitoxin system | RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, Pfam:PF04221. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth D] | IPR009387 | Toxin HigB-2 | Family |