5J7C
A picomolar affinity FN3 domain in complex with hen egg-white lysozyme
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5j7ca_ | Alpha and beta proteins (a+b) | Lysozyme-like | Lysozyme-like | C-type lysozyme | Lysozyme | (Gallus gallus ) [TaxId: 9031 ], | SCOPe (2.08) |
B | d5j7cb_ | Alpha and beta proteins (a+b) | Lysozyme-like | Lysozyme-like | C-type lysozyme | Lysozyme | (Gallus gallus ) [TaxId: 9031 ], | SCOPe (2.08) |
C | d5j7cc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d5j7cc2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d5j7cd1 | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d5j7cd2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Lysozyme-like | 8037428 | 3001879 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Lysozyme-like | 8037428 | 3001879 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Fibronectin type III | 8055103 | 3002063 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Fibronectin type III | 8055103 | 3002063 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Lys | e5j7cA1 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Lys | ECOD (1.6) |
B | Lys | e5j7cB1 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Lys | ECOD (1.6) |
C | fn3 | e5j7cC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3 | ECOD (1.6) |
D | fn3 | e5j7cD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.530.10 | Mainly Alpha | Orthogonal Bundle | Lysozyme | CATH (4.3.0) | |
B | 1.10.530.10 | Mainly Alpha | Orthogonal Bundle | Lysozyme | CATH (4.3.0) | |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00062 | C-type lysozyme/alpha-lactalbumin family (Lys) | C-type lysozyme/alpha-lactalbumin family | Alpha-lactalbumin is the regulatory subunit of lactose synthase, changing the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. C-type lysozymes are secreted bacteriolytic enzymes that cleave the peptidoglycan of bac ... | Domain | |
PF00041 | Fibronectin type III domain (fn3) | Fibronectin type III domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001916 | Glycoside hydrolase, family 22 | Family | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily | |
IPR019799 | Glycoside hydrolase family 22 domain | Domain | |
IPR000974 | Glycoside hydrolase, family 22, lysozyme | Family | |
IPR000562 | Fibronectin type II domain | Domain | |
IPR000083 | Fibronectin, type I | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR036943 | Fibronectin type II domain superfamily | Homologous Superfamily | |
IPR013806 | Kringle-like fold | Homologous Superfamily | |
IPR003961 | Fibronectin type III | Domain | |
IPR050991 | Extracellular Matrix Regulatory Proteins | Family | |
IPR036116 | Fibronectin type III superfamily | Homologous Superfamily |