5J3N
C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5j3nb1 | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | automated matches | Jellyfish (Aequorea victoria ) [TaxId: 6100 ], (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d5j3nb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Jellyfish (Aequorea victoria ) [TaxId: 6100 ], (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GFP | e5j3nA3 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
A | EcoR124_C_C | e5j3nA2 | A: alpha complex topology | X: EcoR124I HsdR C-terminal domain (From Topology) | H: EcoR124I HsdR C-terminal domain (From Topology) | T: EcoR124I HsdR C-terminal domain | F: EcoR124_C_C | ECOD (1.6) |
B | GFP | e5j3nB1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01353 | Green fluorescent protein (GFP) | Green fluorescent protein | - | Domain | |
PF12008 | Type I restriction and modification enzyme - subunit R C terminal (EcoR124_C) | Type I restriction and modification enzyme - subunit R C terminal | This enzyme has been characterised and shown to belong to a new family of the type I class of restriction and modification enzymes. This family is involved in bacterial defence by making double strand breaks in specific double stranded DNA sequences, ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000786 | Green fluorescent protein, GFP | Family | |
IPR011584 | Green fluorescent protein-related | Family | |
IPR009017 | Green fluorescent protein | Homologous Superfamily | |
IPR007409 | Restriction endonuclease, type I, HsdR, N-terminal | Domain | |
IPR004473 | Restriction endonuclease, type I, HsdR | Family | |
IPR040980 | SWI2/SNF2 ATPase | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR022625 | Type I restriction enzyme R protein, C-terminal | Domain | |
IPR051268 | Type I restriction enzyme R subunit | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |