Protruding domain of GII.4 human norovirus CHDC2094 in complex with 3-fucosyllactose (3FL)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d5iywb1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Norovirus Hu/GII.4/CHDC2094/1974/US ) [TaxId: 660656 ], | SCOPe (2.08) |
| B | d5iywb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Norovirus Hu/GII.4/CHDC2094/1974/US ) [TaxId: 660656 ], | SCOPe (2.08) |
| A | d5iywa_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Norovirus Hu/GII.4/CHDC2094/1974/US ) [TaxId: 660656 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Ribosomal_L2 | e5iywB1 | A: alpha arrays | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Ribosomal_L2 | ECOD (v295.2) |
| A | Ribosomal_L2 | e5iywA1 | A: alpha arrays | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Ribosomal_L2 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
| B | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
| A | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
| A | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| VP1 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
| IPR004005 | Calicivirus coat protein | Domain | |
| IPR013643 | Calicivirus coat protein C-terminal | Domain | |
| IPR033703 | Picornavirus/Calicivirus coat protein | Domain |