Annotations: 5IRL

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	LRR_8_4	e5irlA5	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: LRR_8_4	ECOD (1.6)
A	EUF07896	e5irlA4	A: alpha arrays	X: HTH	H: HTH	T: winged	F: EUF07896	ECOD (1.6)
A	EUF07952	e5irlA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: EUF07952	ECOD (1.6)
A	EUF08242	e5irlA3	A: alpha superhelices	X: NLRC4 helical domain HD2 (From Topology)	H: NLRC4 helical domain HD2 (From Topology)	T: NLRC4 helical domain HD2	F: EUF08242	ECOD (1.6)
A	NACHT	e5irlA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: NACHT	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05729	NACHT domain (NACHT)	NACHT domain	This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation [1]. This family is closely related to Pfam:PF00931.	Domain
A	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
A	PF17776	NLRC4 helical domain HD2 (NLRC4_HD2)	NLRC4 helical domain HD2	This entry represents a helical domain found in the NLRC4 protein [2] and NOD2 protein [1].	Domain
A	PF17779	NOD2 winged helix domain (NOD2_WH)	NOD2 winged helix domain	This winged helix domain is found in the NOD2 protein [1]. Its molecular function is not known.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Uncharacterized protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein-containing complex binding muramyl dipeptide binding amide binding organic acid binding carboxylic acid binding monocarboxylic acid binding protein binding ubiquitin binding ubiquitin-like protein binding kinase binding enzyme binding protein kinase binding CARD domain binding protein domain specific binding ADP binding Hsp90 protein binding heat shock protein binding glycosaminoglycan binding peptidoglycan binding Hsp70 protein binding protein-folding chaperone binding molecular transducer activity pattern recognition receptor activity signaling receptor activity cytoskeletal protein binding actin binding	multicellular organismal process regulation of tumor necrosis factor production regulation of cellular process negative regulation of biological process negative regulation of tumor necrosis factor production cytokine production regulation of cytokine production negative regulation of cellular process regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process negative regulation of metabolic process biological regulation multicellular organismal process regulation of tumor necrosis factor production regulation of cellular process negative regulation of biological process negative regulation of tumor necrosis factor production cytokine production regulation of cytokine production negative regulation of cellular process regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process negative regulation of metabolic process biological regulation tumor necrosis factor superfamily cytokine production negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression negative regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of tumor necrosis factor superfamily cytokine production metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process negative regulation of multicellular organismal process regulation of metabolic process negative regulation of interleukin-2 production regulation of interleukin-2 production interleukin-2 production regulation of localization import into cell positive regulation of cellular component organization regulation of cellular component organization transport positive regulation of biological process vesicle-mediated transport cellular component organization localization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis positive regulation of cellular process regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport establishment of localization positive regulation of phagocytosis positive regulation of transport endocytosis cellular response to stimulus regulation of cell motility response to stimulus regulation of response to external stimulus neutrophil chemotaxis regulation of granulocyte chemotaxis taxis regulation of cell migration myeloid leukocyte migration cell migration regulation of immune system process cell motility locomotion cell chemotaxis chemotaxis regulation of leukocyte chemotaxis regulation of leukocyte migration response to external stimulus regulation of chemotaxis neutrophil migration granulocyte migration leukocyte migration cellular response to chemical stimulus regulation of response to stimulus immune system process response to chemical regulation of locomotion granulocyte chemotaxis regulation of neutrophil chemotaxis leukocyte chemotaxis regulation of neutrophil migration multicellular organismal-level homeostasis homeostatic process homeostasis of number of cells intestinal stem cell homeostasis biological process involved in interspecies interaction between organisms response to other organism defense response response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus catabolic process macroautophagy autophagy xenophagy process utilizing autophagic mechanism positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway pattern recognition receptor signaling pathway regulation of signal transduction cell communication immune response-activating signaling pathway negative regulation of toll-like receptor 2 signaling pathway positive regulation of immune response signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway immune response immune response-activating cell surface receptor signaling pathway regulation of innate immune response regulation of toll-like receptor 2 signaling pathway regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus negative regulation of signaling signaling innate immune response activating cell surface receptor signaling pathway negative regulation of cell communication positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress innate immune response toll-like receptor 2 signaling pathway cell surface pattern recognition receptor signaling pathway regulation of signaling positive regulation of innate immune response cell surface receptor signaling pathway negative regulation of response to stimulus defense response to symbiont negative regulation of signal transduction negative regulation of immune system process regulation of cell communication positive regulation of interleukin-8 production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process interleukin-8 production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of cytokine production regulation of interleukin-8 production intracellular signal transduction JNK cascade intracellular signaling cassette MAPK cascade interleukin-10 production regulation of interleukin-10 production positive regulation of interleukin-10 production negative regulation of inflammatory response inflammatory response to antigenic stimulus negative regulation of inflammatory response to antigenic stimulus negative regulation of immune response regulation of inflammatory response to antigenic stimulus regulation of inflammatory response negative regulation of response to external stimulus negative regulation of defense response inflammatory response regulation of immune effector process negative regulation of macrophage cytokine production myeloid leukocyte cytokine production cytokine production involved in immune response production of molecular mediator of immune response negative regulation of cytokine production involved in immune response regulation of cytokine production involved in immune response negative regulation of immune effector process immune effector process negative regulation of production of molecular mediator of immune response regulation of macrophage cytokine production regulation of production of molecular mediator of immune response macrophage cytokine production regulation of type II interferon production type II interferon production negative regulation of type II interferon production positive regulation of myeloid leukocyte cytokine production involved in immune response positive regulation of immune effector process positive regulation of cytokine production involved in immune response positive regulation of production of molecular mediator of immune response positive regulation of macrophage cytokine production regulation of leukocyte activation regulation of cell activation lymphocyte activation leukocyte activation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell activation positive regulation of leukocyte activation B cell activation cell activation positive regulation of B cell activation regulation of lymphocyte activation antibacterial peptide production regulation of humoral immune response regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria antimicrobial humoral immune response mediated by antimicrobial peptide positive regulation of antimicrobial peptide biosynthetic process positive regulation of antibacterial peptide biosynthetic process positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria defense response to Gram-positive bacterium regulation of antimicrobial peptide biosynthetic process peptide biosynthetic process antibacterial peptide biosynthetic process peptide metabolic process humoral immune response regulation of antibacterial peptide production antimicrobial humoral response positive regulation of defense response to bacterium positive regulation of antimicrobial peptide production positive regulation of humoral immune response antimicrobial peptide production regulation of defense response to bacterium regulation of antimicrobial humoral response antibacterial humoral response biosynthetic process of antibacterial peptides active against Gram-positive bacteria positive regulation of antimicrobial humoral response regulation of antimicrobial peptide production antimicrobial peptide biosynthetic process positive regulation of antibacterial peptide production regulation of antibacterial peptide biosynthetic process cellular response to stress response to endoplasmic reticulum stress leukocyte apoptotic process regulation of programmed cell death macrophage apoptotic process negative regulation of leukocyte apoptotic process myeloid cell apoptotic process regulation of leukocyte apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of macrophage apoptotic process cell death negative regulation of apoptotic process regulation of macrophage apoptotic process inflammatory cell apoptotic process negative regulation of myeloid cell apoptotic process apoptotic process regulation of myeloid cell apoptotic process programmed cell death positive regulation of cell communication positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction regulation of intracellular signal transduction positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction positive regulation of signaling positive regulation of ERK1 and ERK2 cascade positive regulation of MAPK cascade regulation of MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade response to dsRNA response to nitrogen compound response to exogenous dsRNA response to organic cyclic compound regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production cellular response to nitrogen compound response to oxygen-containing compound cellular response to muramyl dipeptide response to muramyl dipeptide cellular response to oxygen-containing compound cellular localization establishment of localization in cell innate immune response in mucosa mucosal immune response organ or tissue specific immune response regulation of non-canonical NF-kappaB signal transduction non-canonical NF-kappaB signal transduction positive regulation of non-canonical NF-kappaB signal transduction interleukin-17 production regulation of interleukin-17 production positive regulation of interleukin-17 production temperature homeostasis regulation of cytokine production involved in inflammatory response production of molecular mediator involved in inflammatory response cytokine production involved in inflammatory response positive regulation of cytokine production involved in inflammatory response regulation of dendritic cell antigen processing and presentation positive regulation of dendritic cell antigen processing and presentation positive regulation of antigen processing and presentation antigen processing and presentation regulation of antigen processing and presentation dendritic cell antigen processing and presentation positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production regulation of protein modification process positive regulation of phosphorylation regulation of protein phosphorylation positive regulation of protein metabolic process peptidyl-tyrosine modification positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of peptidyl-tyrosine phosphorylation positive regulation of protein modification process regulation of phosphate metabolic process peptidyl-amino acid modification phosphate-containing compound metabolic process protein metabolic process protein modification process phosphorus metabolic process positive regulation of protein phosphorylation protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process regulation of peptidyl-tyrosine phosphorylation primary metabolic process macromolecule modification regulation of phosphorylation regulation of phosphorus metabolic process peptidyl-tyrosine phosphorylation antibacterial innate immune response adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity T cell mediated immunity negative regulation of lymphocyte mediated immunity regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains leukocyte mediated immunity regulation of T cell mediated immunity regulation of adaptive immune response negative regulation of adaptive immune response adaptive immune response negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity negative regulation of leukocyte mediated immunity negative regulation of T cell mediated immunity regulation of interleukin-18 production negative regulation of interleukin-18 production interleukin-18 production regulation of cellular response to stress stress-activated MAPK cascade positive regulation of stress-activated protein kinase signaling cascade positive regulation of stress-activated MAPK cascade regulation of stress-activated protein kinase signaling cascade regulation of stress-activated MAPK cascade stress-activated protein kinase signaling cascade detection of external biotic stimulus detection of biotic stimulus detection of bacterium detection of stimulus detection of other organism interleukin-1 production regulation of interleukin-1 beta production positive regulation of interleukin-1 beta production positive regulation of interleukin-1 production regulation of interleukin-1 production interleukin-1 beta production cytoplasmic pattern recognition receptor signaling pathway intracellular receptor signaling pathway nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway nucleotide-binding oligomerization domain containing 2 signaling pathway positive regulation of xenophagy regulation of autophagy positive regulation of macroautophagy positive regulation of autophagy regulation of xenophagy regulation of catabolic process positive regulation of catabolic process regulation of macroautophagy positive regulation of JNK cascade regulation of JNK cascade positive regulation of DNA-binding transcription factor activity positive regulation of NF-kappaB transcription factor activity RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process positive regulation of molecular function nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of molecular function regulation of DNA-binding transcription factor activity regulation of DNA-templated transcription modulation by host of symbiont process host-mediated regulation of intestinal microbiota composition biological process involved in interaction with symbiont biological process involved in symbiotic interaction regulation of protein ubiquitination positive regulation of post-translational protein modification protein K63-linked ubiquitination regulation of protein K63-linked ubiquitination protein ubiquitination regulation of protein modification by small protein conjugation or removal positive regulation of protein K63-linked ubiquitination positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of protein polyubiquitination regulation of post-translational protein modification protein polyubiquitination positive regulation of protein polyubiquitination post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal detection of peptidoglycan detection of molecule of bacterial origin detection of chemical stimulus detection of muramyl dipeptide response to molecule of bacterial origin response to peptidoglycan positive regulation of DNA-templated transcription transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process maintenance of gastrointestinal epithelium system process digestion epithelial structure maintenance digestive system process anatomical structure homeostasis tissue homeostasis cellular response to peptidoglycan cellular response to molecule of bacterial origin cellular response to biotic stimulus interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production positive regulation of leukocyte mediated immunity regulation of humoral immune response mediated by circulating immunoglobulin positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity positive regulation of B cell mediated immunity humoral immune response mediated by circulating immunoglobulin regulation of immunoglobulin mediated immune response positive regulation of adaptive immune response positive regulation of immunoglobulin mediated immune response positive regulation of humoral immune response mediated by circulating immunoglobulin immunoglobulin mediated immune response regulation of B cell mediated immunity B cell mediated immunity response to lipid cellular response to lipopolysaccharide response to lipopolysaccharide cellular response to lipid positive regulation of type 2 immune response type 2 immune response regulation of type 2 immune response cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation regulation of monocyte chemotactic protein-1 production positive regulation of monocyte chemotactic protein-1 production monocyte chemotactic protein-1 production regulation of chemokine production chemokine production positive regulation of chemokine production regulation of nitric-oxide synthase biosynthetic process positive regulation of nitric-oxide synthase biosynthetic process nitric-oxide synthase biosynthetic process response to nutrient levels regulation of biological quality regulation of appetite negative regulation of interleukin-12 production positive regulation of autophagy of mitochondrion mitophagy regulation of autophagy of mitochondrion positive regulation of mitophagy regulation of mitophagy autophagy of mitochondrion Notch signaling pathway regulation of Notch signaling pathway positive regulation of Notch signaling pathway	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell surface membrane-bounded organelle intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell surface membrane-bounded organelle intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle protein-containing complex cell periphery basal part of cell membrane plasma membrane basal plasma membrane plasma membrane region basolateral plasma membrane Golgi apparatus endomembrane system cytoskeleton membraneless organelle intracellular membraneless organelle extrinsic component of plasma membrane extrinsic component of membrane mitochondrion

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011029	Death-like domain superfamily	Homologous Superfamily
A	IPR041075	NOD1/2, winged helix domain	Domain
A	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A	IPR051261	NOD-like receptor (NLR)	Family
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR001611	Leucine-rich repeat	Repeat
A	IPR007111	NACHT nucleoside triphosphatase	Domain
A	IPR041267	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Domain
A	IPR001315	CARD domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.