Annotations: 5IJZ

Crystal structure of glutamate dehydrogenase(GDH) from Corynebacterium glutamicum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5ijzl2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
L	d5ijzl1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
K	d5ijzk2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
K	d5ijzk1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
J	d5ijzj2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
J	d5ijzj1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
I	d5ijzi2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
I	d5ijzi1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
H	d5ijzh2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
H	d5ijzh1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
G	d5ijzg2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
G	d5ijzg1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
F	d5ijzf2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
F	d5ijzf1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
E	d5ijze2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
E	d5ijze1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
D	d5ijzd2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
D	d5ijzd1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
C	d5ijzc2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
C	d5ijzc1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
B	d5ijzb2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
B	d5ijzb1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
A	d5ijza2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)
A	d5ijza1	Alpha and beta proteins (a/b)	Aminoacid dehydrogenase-like, N-terminal domain	Aminoacid dehydrogenase-like, N-terminal domain	automated matches	automated matches	(Corynebacterium glutamicum ATCC 13032 ) [TaxId: 196627 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MtdA-like	8067029	3000046	SCOP2B (2022-06-29)
A	SCOP2 Family	Aminoacid dehydrogenase-like	8067028	4000004	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MtdA-like	8067029	3000046	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e5ijzL1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
L	FRB_dom	e5ijzL2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
K	Usher	e5ijzK2	A: alpha arrays	X: Inserted helical domain in fatty acid synthase subunit beta	H: Voltage-gated ion channels	T: Voltage-gated ion channels	F: Usher	ECOD (v295.2)
J		e5ijzJ1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
J	FRB_dom	e5ijzJ2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
I		e5ijzI1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
I	FRB_dom	e5ijzI2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
H		e5ijzH1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
H	FRB_dom	e5ijzH2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
G		e5ijzG1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
G	FRB_dom	e5ijzG2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
F		e5ijzF2	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
F	FRB_dom	e5ijzF1	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
E		e5ijzE2	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
E	FRB_dom	e5ijzE1	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
D		e5ijzD1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
D	FRB_dom	e5ijzD2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
C		e5ijzC1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
C	FRB_dom	e5ijzC2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
B		e5ijzB1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
B	FRB_dom	e5ijzB2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)
A		e5ijzA1	A: alpha arrays	X: CXXC domain-like	H: CXXC domain	T: CXXC domain	F:	ECOD (v295.2)
A	FRB_dom	e5ijzA2	A: alpha arrays	X: MocoBD/DmpA-related	H: MocoBD/DmpA-related	T: Retrovirus capsid protein-C	F: FRB_dom	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
L	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
L	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
J	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
J	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
J	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
I	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
I	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
I	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
H	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
H	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
G	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
F	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
E	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
D	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
C	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
B	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	1.10.285.10	Mainly Alpha	Orthogonal Bundle	Glutamate Dehydrogenase	Chain A, domain 3	CATH (4.3.0)
A	3.40.50.10860	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Leucine Dehydrogenase, chain A, domain 1	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (ELFV_dehydrog_N)	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain		Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (ELFV_dehydrog)	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	NADP-specific glutamate dehydrogenase	oxidoreductase activity, acting on the CH-NH2 group of donors amino-acid dehydrogenase [NAD(P)+] activity L-glutamate dehydrogenase (NADP+) activity oxidoreductase activity L-glutamate dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor catalytic activity	oxoacid metabolic process glutamate family amino acid biosynthetic process small molecule biosynthetic process dicarboxylic acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process L-glutamate biosynthetic process carboxylic acid biosynthetic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process glutamate metabolic process proteinogenic amino acid biosynthetic process oxoacid metabolic process glutamate family amino acid biosynthetic process small molecule biosynthetic process dicarboxylic acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process L-glutamate biosynthetic process carboxylic acid biosynthetic process proteinogenic amino acid metabolic process amino acid biosynthetic process biosynthetic process glutamate metabolic process proteinogenic amino acid biosynthetic process small molecule metabolic process metabolic process cellular process dicarboxylic acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006095	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR046346	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006096	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050724	Glutamate/Leucine/Phenylalanine/Valine dehydrogenases	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006097	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR014362	Glutamate dehydrogenase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR033524	Leu/Phe/Val dehydrogenases active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR033922	NAD(P) binding domain of glutamate dehydrogenase	Domain