Crystal Structure of Broadly Neutralizing HIV-1 Fusion Peptide-Targeting Antibody VRC34.01 Fab
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d5i8ea_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| C | d5i8ec_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| B | d5i8eb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| D | d5i8ed1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | An_peroxidase | e5i8eA1 | A: a/b three-layered sandwiches | X: Chlorophyll a-b binding protein | H: Chlorophyll a-b binding protein | T: Chlorophyll a-b binding protein | F: An_peroxidase | ECOD (v294.1) |
| C | An_peroxidase | e5i8eC1 | A: a/b three-layered sandwiches | X: Chlorophyll a-b binding protein | H: Chlorophyll a-b binding protein | T: Chlorophyll a-b binding protein | F: An_peroxidase | ECOD (v294.1) |
| B | An_peroxidase | e5i8eB1 | A: a/b three-layered sandwiches | X: Chlorophyll a-b binding protein | H: Chlorophyll a-b binding protein | T: Chlorophyll a-b binding protein | F: An_peroxidase | ECOD (v294.1) |
| D | An_peroxidase | e5i8eD1 | A: a/b three-layered sandwiches | X: Chlorophyll a-b binding protein | H: Chlorophyll a-b binding protein | T: Chlorophyll a-b binding protein | F: An_peroxidase | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| VRC34.01 Fab | VH-CH1 | Homo sapiens (human) | IGHV1-2*02, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202615-0) | |
| VRC34.01 Fab | L-KAPPA | Homo sapiens (human) | IGKV1-9*01, IGKJ4*01, IGKJ4*02, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202615-0) |
