5H9E
Crystal structure of E. coli Cascade bound to a PAM-containing dsDNA target (32-nt spacer) at 3.20 angstrom resolution.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cse1 N-terminal domain-like | 8053924 | 3002247 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cse1 C-terminal domain-like | 8053925 | 3002248 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cse2-like | 8053946 | 3002252 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cse2-like | 8053946 | 3002252 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | CRISPR-associated proteins | 8052153 | 3001554 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | CRISPR-associated proteins | 8052154 | 3001554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CRISPR_Cse1 | e5h9eA1 | A: a+b complex topology | X: Cas8-like | H: Cascade subunit CasA/Cse1/Cas8 (From Topology) | T: Cascade subunit CasA/Cse1/Cas8 | F: CRISPR_Cse1 | ECOD (1.6) |
B | CRISPR_Cse2 | e5h9eB1 | A: alpha bundles | X: CRISPR-associated protein Cse2 (From Topology) | H: CRISPR-associated protein Cse2 (From Topology) | T: CRISPR-associated protein Cse2 | F: CRISPR_Cse2 | ECOD (1.6) |
C | CRISPR_Cse2 | e5h9eC1 | A: alpha bundles | X: CRISPR-associated protein Cse2 (From Topology) | H: CRISPR-associated protein Cse2 (From Topology) | T: CRISPR-associated protein Cse2 | F: CRISPR_Cse2 | ECOD (1.6) |
D | Cas_CT1975 | e5h9eD1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: Cas_CT1975 | ECOD (1.6) |
E | Cas_CT1975 | e5h9eE1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: Cas_CT1975 | ECOD (1.6) |
F | Cas_CT1975 | e5h9eF1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: Cas_CT1975 | ECOD (1.6) |
G | Cas_CT1975 | e5h9eG1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: Cas_CT1975 | ECOD (1.6) |
H | Cas_CT1975 | e5h9eH1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: Cas_CT1975 | ECOD (1.6) |
I | Cas_CT1975 | e5h9eI1 | A: a+b two layers | X: Alpha-beta plaits | H: Cas7-related | T: CRISPR-associated protein Cas7/Csa2-related | F: Cas_CT1975 | ECOD (1.6) |
J | Cas_Cas5d | e5h9eJ1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR system Cas5 homologs (From Topology) | T: CRISPR system Cas5 homologs | F: Cas_Cas5d | ECOD (1.6) |
N [auth K] | CRISPR_assoc_C | e5h9eK2 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: CRISPR_assoc_C | ECOD (1.6) |
N [auth K] | CRISPR_assoc_N | e5h9eK1 | A: a+b two layers | X: Alpha-beta plaits | H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology) | T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related | F: CRISPR_assoc_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.520.40 | Mainly Alpha | Orthogonal Bundle | Peroxidase | domain 1 | CATH (4.3.0) |
C | 1.10.520.40 | Mainly Alpha | Orthogonal Bundle | Peroxidase | domain 1 | CATH (4.3.0) |
J | 3.30.70.2660 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09481 | CRISPR-associated protein Cse1 (CRISPR_cse1) (CRISPR_Cse1) | CRISPR-associated protein Cse1 (CRISPR_cse1) | - | Family | |
PF09485 | CRISPR-associated protein Cse2 (CRISPR_cse2) (CRISPR_Cse2) | CRISPR-associated protein Cse2 (CRISPR_cse2) | - | Family | |
PF09344 | CT1975-like protein (Cas_CT1975) | CT1975-like protein | - | Family | |
PF09704 | CRISPR-associated protein (Cas_Cas5) (Cas_Cas5d) | CRISPR-associated protein (Cas_Cas5) | - | Family | |
N [auth K] | PF08798 | CRISPR associated protein (CRISPR_assoc) | CRISPR associated protein | This domain forms an anti-parallel beta strand structure with flanking alpha helical regions. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013381 | CRISPR-associated protein Cse1 | Family | |
IPR013382 | CRISPR-associated protein Cse2 | Family | |
IPR038287 | Cse2 superfamily | Homologous Superfamily | |
IPR010148 | CRISPR-associated protein, CT1975 | Family | |
IPR010147 | CRISPR-associated protein, CasD | Family | |
IPR021124 | CRISPR-associated protein, Cas5 | Family | |
IPR013422 | CRISPR-associated protein Cas5, N-terminal | Domain | |
N [auth K] | IPR010179 | CRISPR-associated protein Cse3 | Family |